CF835281

Overview
NameCF835281
Unique NameCF835281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig940 contig Csv1_Contig940:22..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 62/157 (39.49%), Postives = 92/157 (58.60%), Query Frame = 1
Query:   94 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDS-RTANRALANQNLPGPSNSLDELKSSFRNVGL 561
            LS S+Y  TCP V  I+   L   F  D    A+L+RL FHDC V GCDASILL+        +  +  N   R  +++ ++K ++E  C + VSC+D++ +AA  +VAL+GGP  +VPLGR+DS  T ++ +A+  LP  +  +D   S F N G+
Sbjct:   38 LSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGM 194          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.135e-24
Identity = 67/167 (40.12%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  112 SSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALLRSSHVWK 612
            ++TC +    I   ++K + +D  I   L+RL + DC V+GCD SILL   N   SE+  AP N    GF +ID +K  +E  C  VVSCADIL +A   +V ++G PS+ V  GRRD  T N      +LP PS S+DE  + F++ GL D  D+  LL +  + K
Sbjct:   43 TNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPN---SER-TAPQNRGLGGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAV--DLPSPSISVDESLAYFKSKGL-DVLDMTTLLGAHSMGK 202          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   85 QAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNN-SARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALL 591
            QA LS  +Y+ TCP     +  ++     +        +RL FHDC VDGCDASIL+ ST    SE+ A  N +     F+VI  +K AVE  C  +VSC+DIL  A    +++ GGP   V  GR+DS  ++       L  P+ ++D + S F + GL  + ++VAL+
Sbjct:   19 QANLSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQ-EMVALV 187          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.300e-22
Identity = 60/167 (35.93%), Postives = 91/167 (54.49%), Query Frame = 1
Query:   94 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVAL 588
            L+  +Y  TCP+   I+ + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N S  G  F+++  +K A+E +C  VVSCADIL  A    V + GGP + V LGR+D   +       NLP  + S+ ++ S F+  G   K +LVAL
Sbjct:   26 LTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLI-ATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLK-ELVAL 190          

HSP 2 Score: 20.7866 bits (42), Expect = 8.300e-22
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 2
Query:  578 LLHSSGAHTFGRAQCK 625
            L+  SG HT G + CK
Sbjct:  187 LVALSGGHTIGFSHCK 202          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 61/171 (35.67%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   94 LSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALLRSSHV 606
            L  +FY  TCP   +I+ + +K  +        S +R  FHDC V+ CDAS+LLDST     EK     +   R F  I+ +K A+E+ C  VVSC+DIL ++A   +   GGP   +  GRRD   +   +    LP  + S+  +   F+++G+ D   LVALL S  V
Sbjct:   31 LMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEK-EHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSV 199          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   91 QLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFA---APNNNSAR--GFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALLRSSH 603
            +LS  +YS  CP +  ++  V  + F        + IRL FHDCFV+GCD SIL+++     S+K A   A  N   R  GF+ I   KA VE  C  +VSC+DIL IAA   + L+GGP + V  GR D + +       N+P  ++++D+L   F + GL    + + +L  SH
Sbjct:   41 ELSADYYSKKCPQLETLVGSVTSQRFKEVPISAPATIRLFFHDCFVEGCDGSILIETKK--GSKKLAEREAYENKELREEGFDSIIKAKALVESHCPSLVSCSDILAIAARDFIHLAGGPYYQVKKGRWDGKRSTAKNVPPNIPRSNSTVDQLIKLFASKGLT--VEELVVLSGSH 212          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.948e-20
Identity = 57/173 (32.95%), Postives = 93/173 (53.76%), Query Frame = 1
Query:   76 SPSQAQLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVAL 588
            S   A L   +Y  TCP+   I+ + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N+S  G  F+++  +K A+E +C  VVSCADIL  A    V + GGP + V LGR+D   +       N+P  + ++ ++   F+  G + + ++VAL
Sbjct:   27 SADVAILRTDYYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLI-ATNSFNKAERDDDLNDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPYFDVKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLR-EMVAL 197          

HSP 2 Score: 21.9422 bits (45), Expect = 1.948e-20
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  590 SGAHTFGRAQCK 625
            SGAHT G + CK
Sbjct:  198 SGAHTIGFSHCK 209          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.291e-19
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  313 RGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSF 546
            RGF VID++K  +E  C + VSCADILT+AA  SV   GGPSW VPLGRRDS  AN A AN +LPG ++S  EL+++F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80          
BLAST of CF835281 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 55/173 (31.79%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   91 QLSPSFYSSTCPNVLNIIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPS-WAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALLRSSHV 606
            +L  ++Y  +CP    II   ++  +        S +R  FHDC V  CDAS+LL++   ++SE+  +  +   R F+ +  +K A+EK C   VSCADI+ ++A   + +  GP    +  GRRDSR +        +P  ++SL  + S+F ++G+ D    VALL +  V
Sbjct:   29 ELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQ-KSKRSFGMRNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSV 199          
The following BLAST results are available for this feature:
BLAST of CF835281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER29_ARATH4.941e-2539.49Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER61_ARATH7.135e-2440.12Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER6_ARATH5.113e-2236.47Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER41_ARATH8.300e-2235.93Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER42_ARATH8.722e-2235.67Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER19_ARATH1.139e-2136.36Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER65_ARATH1.948e-2032.95Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PERX_WHEAT5.291e-1958.97Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]
PER21_ARATH3.430e-1831.79Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835281 ID=CF835281; Name=CF835281; organism=Citrus sinensis; type=EST; length=630bp
AGTACTCTTAGCCAAATGGCTTCACTTCGTTATCTTCTTCCATTAGCTCT
TGTTGTTGCTTTTGTGCTTGAGGGATCACCCTCTCAAGCTCAACTTTCTC
CATCTTTTTATTCTTCCACATGCCCTAATGTATTGAACATTATCGAGGAT
GTGCTTAAGAAAGCGTTCTCGTCCGATATCCGGATCGGTGCCAGCCTCAT
CAGGCTTCATTTCCATGACTGTTTTGTTGATGGGTGTGATGCTTCGATTT
TGCTGGACAGCACTAACACCATAGACAGCGAGAAATTTGCTGCGCCAAAT
AATAATTCGGCGAGGGGTTTTGAAGTTATTGATAACATGAAAGCTGCCGT
TGAAAAGGCATGTCGAAGGGTTGTTTCCTGCGCTGATATTCTTACTATTG
CGGCTGAACGATCCGTTGCTTTGTCAGGGGGTCCGTCATGGGCAGTTCCA
TTGGGAAGAAGAGACAGCAGAACGGCAAACAGAGCTCTTGCAAATCAGAA
TCTTCCAGGACCATCTAATTCTCTTGATGAGCTCAAATCTAGTTTTAGAA
ATGTTGGCCTCAATGACAAGTTTGATCTTGTTGCACTCCTCCGGAGCTCA
CACGTTTGGAAGGGCTCAGTGCAAATTTTT
back to top