CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCK-FFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGA--VLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV LSGAHT GR+ C  F SDRL            ++  L   LR  CP     +       DV TP+A D +Y+ N+     L  SD  L ++P  +TA +V D  +    +   F  +M++M +L+  TG+QG++R NCR +N
Sbjct:  197 DLVVLSGAHTVGRSHCSSFVSDRL-------DVPSDINPALAAFLRTRCPPNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSP--ETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 333          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 53/155 (34.19%), Postives = 76/155 (49.03%), Query Frame = -2
Query:  198 RNVGLNDKFDLVALS-GAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTA--AIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 653
            R  GL+D+ DLV LS GAHT G   C F   RL         DPT++    + LR  CPQGG+  V    D  +   FDN+ F N++  +G++ SD  L+          + +E    ++  F  +F  +MI+MG +    G +GEIR  C   N
Sbjct:  172 REKGLSDQ-DLVLLSAGAHTIGTTACFFVIPRL------DAQDPTINPEFFQILRSKCPQGGDVNVRIPLDWDSQFVFDNQIFQNIKNGRGVILSDSVLYQDNNMKKIIDSYLETNQSSKANFAADFTKAMIKMGAIGVKIGAEGEIRRLCSATN 319          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 52/143 (36.36%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            ++VAL+GAHT G A+C            +G  +P        QL+  C      + L   D  TP  FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  + + F  +F  +MI+MG+L P  G Q EIR  C RVN
Sbjct:  230 EMVALAGAHTVGFARCSTVCT-------SGNVNPAA------QLQCNCSATLTDSDLQQLDT-TPTMFDKVYYDNLNNNQGIMFSDQVL--TGDATTAGFVTDYSNDVSVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 356          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 52/143 (36.36%), Postives = 70/143 (48.95%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            ++VAL+GAHT G A+C            +G  +P        QL+  C      + L   D  TP  FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  +   F  +F  +MI+MG+L P  G Q EIR  C RVN
Sbjct:  231 EMVALAGAHTVGFARCSTVCT-------SGNVNPAA------QLQCNCSATLTDSDLQQLDT-TPTMFDKVYYDNLNSNQGIMFSDQVL--TGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVN 357          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 50/158 (31.65%), Postives = 75/158 (47.47%), Query Frame = -2
Query:  189 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANF---DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 653
            +++G+ D   LVAL G+H+ GR  C     RLY      + DP+++   +  +   CP          +   D  TP   DN Y+ N+   KGLL  D +L       T  IV+   ++Q  FFK F  ++  +    PLTG++GEIR  C   N N+
Sbjct:  181 KSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQL--AHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 51/149 (34.23%), Postives = 69/149 (46.31%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            G N + ++V L+GAHT G ++C                   +++     L+  CP   N   L   D  +P  FD KYF  L   +GLL SDQEL  +    TA  V  +     AF  +F  +M++M NL P  G Q EIR  C RVN
Sbjct:  215 GFNQR-EMVVLAGAHTVGFSRCAVLCT-----------STNLNQNRSATLQCTCPASANDTGLVGLD-PSPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTA--VRRYRDATGAFLTDFAAAMVKMSNLPPSAGVQLEIRNVCSRVN 348          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER2_MAIZE2.725e-1335.62Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]
PER13_ARATH4.649e-1334.19Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PERX_SOLTU1.036e-1236.36Suberization-associated anionic peroxidase OS=Sola... [more]
PER1_SOLLC1.036e-1236.36Suberization-associated anionic peroxidase 1 OS=So... [more]
PER42_ARATH2.307e-1231.65Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PERN_IPOBA5.140e-1234.23Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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