CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 70/151 (46.36%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            N G   K +LV LSGAHT G+AQC  F  R+Y+       +  +D T  K L+  CP  G    L+ FDV TP+ FDN Y+ NLR +KGLL SDQ+LF+  G  T + V  +  N   F  +F  +MI+MGNL PLTG  G+IR NCR+ N
Sbjct:  176 NKGFTTK-ELVTLSGAHTIGQAQCTAFRTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.758e-28
Identity = 68/149 (45.64%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN + DLVALSGAHT G++QC  F DRLY+ +        +D       +  CP  G    LA  D+ TP++FDN Y+ NL  +KGLL +DQ LF + GA T  IV ++ +N++ F  +F  +MI+MGN++PLTG+ GEIR  C  VN
Sbjct:  181 GLNTR-DLVALSGAHTIGQSQCFLFRDRLYENSSD------IDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGS-GASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.758e-28
Identity = 68/151 (45.03%), Postives = 88/151 (58.28%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            N G+N  FD VAL GAHT G+  C  FSDR+  F  TG+PDP++D  L+  LR  C      A+    D  +P  FDN++F  +R R+G+LQ DQ L S P   T  IV  +  N   F + FV +M++MG +  LTG  GEIR NCRR N
Sbjct:  170 NKGMNT-FDAVALLGAHTVGQGNCGLFSDRITSFQGTGRPDPSMDPALVTSLRNTCRNSATAAL----DQSSPLRFDNQFFKQIRKRRGVLQVDQRLASDP--QTRGIVARYANNNAFFKRQFVRAMVKMGAVDVLTGRNGEIRRNCRRFN 313          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDF----GRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN + DLVAL+GAHT G A C    DRL++FN TG PDP++D T L QLR LCPQ G+ +     D  + + FD  YFSNLR  +G+L+SDQ+L++   A T   V+ F    G     F   F  SM++M N++  TG  GEIR  C  +N
Sbjct:  181 GLNTQ-DLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQNGDASRRVGLDTGSVNNFDTSYFSNLRNGRGVLESDQKLWT--DASTQVFVQRFLGIRGLLGLTFGVEFGRSMVKMSNIEVKTGTNGEIRKVCSAIN 330          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN++ DLV+LSG HT G A+C  F  RLY+ N   +PD T++R+    LR +CP  G    ++  D+ +P  FDN YF  L   KGLL SD+ L +     T A+V+ +  ++  FF+ F  SM+ MGN++PLTG  GEIR +C  +N
Sbjct:  199 GLNEE-DLVSLSGGHTIGVARCTTFKQRLYNQNGNNQPDETLERSYYYGLRSICPPTGGDNNISPLDLASPARFDNTYFKLLLWGKGLLTSDEVLLTGNVGKTGALVKAYAEDERLFFQQFAKSMVNMGNIQPLTGFNGEIRKSCHVIN 346          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT G+AQC  F+D +Y+       D  ++      LR  CP+ G+ A LA  D  TP+AFDN Y++NL  +KGLL SDQELF++   D+   V  F  + +AF   F  +M++MGNL P TG QG+IR +C +VN
Sbjct:  187 DMVALSGAHTIGQAQCSSFNDHIYN-------DTNINSAFAASLRANCPRAGSTA-LAPLDTTTPNAFDNAYYTNLLSQKGLLHSDQELFNSGSTDST--VRSFASSTSAFNSAFATAMVKMGNLSPQTGTQGQIRRSCWKVN 319          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.917e-28
Identity = 69/149 (46.31%), Postives = 91/149 (61.07%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN + DLVALSGAHT G+AQC  F  RLYD +        +D       +  CP  G    LA  D  TP++FDN Y+ NL  +KGLL+SDQ LF T GA T +IV ++ RN + F  +F  +MI+MG+++ LTG+ G+IR  C  VN
Sbjct:  175 GLNTR-DLVALSGAHTLGQAQCLTFKGRLYDNSSD------IDAGFSSTRKRRCPVNGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLESDQVLFGT-GASTDSIVTEYSRNPSRFASDFSAAMIKMGDIQTLTGSDGQIRRICSAVN 315          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ--GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN   D+VALSGAHT G+AQC  F  R+Y        D  ++      LR  CPQ  G     LAN D  T + FDN Y++NL  +KGLL SDQ LF+    D    V +F  N  AF  +F  +MI+MGN+ P TG QG+IRL+C RVN
Sbjct:  173 GLNT-VDMVALSGAHTIGQAQCSTFRARIYG------GDTNINAAYAASLRANCPQTVGSGDGSLANLDTTTANTFDNAYYTNLMSQKGLLHSDQVLFNNDTTDNT--VRNFASNPAAFSSSFTTAMIKMGNIAPKTGTQGQIRLSCSRVN 314          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.260e-26
Identity = 68/151 (45.03%), Postives = 88/151 (58.28%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            N G+N  FD VAL GAHT G A C  F DR+ +F  TG PDP++D TL  +LR  C   G  A L      TP +FDN +F  +R RKG+L  DQ + S P   T+ +V  +  N   F + F I+M++MG +  LTG+ GEIR NCR  N
Sbjct:  174 NKGMN-VFDSVALLGAHTVGIASCGNFVDRVTNFQGTGLPDPSMDPTLAGRLRNTCAVPGGFAALDQSMPVTPVSFDNLFFGQIRERKGILLIDQLIASDPA--TSGVVLQYASNNELFKRQFAIAMVKMGAVDVLTGSAGEIRTNCRAFN 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALSGAHT G A C   S R+Y+F+ T + DP+++R  + QL+++CP G +  +  N D  +P  FDN YF NL+  KGL  SDQ LF+     + + V  F  ++ AF + F+ ++ ++G +  LTGN GEIR +C RVN
Sbjct:  185 DMIALSGAHTIGFAHCGKMSKRIYNFSPTTRIDPSINRGYVVQLKQMCPIGVDVRIAINMDPTSPRTFDNAYFKNLQQGKGLFTSDQILFT--DQRSRSTVNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER1_ARAHY6.043e-2946.36Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PER5_ARATH1.758e-2845.64Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PER57_ARATH1.758e-2845.03Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PERN1_TOBAC2.999e-2845.75Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER9_ARATH2.999e-2842.95Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PER66_MAIZE2.999e-2846.15Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]
PER4_ARATH3.917e-2846.31Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER1_HORVU1.140e-2746.36Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER28_ARATH1.260e-2645.03Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PER45_ARATH1.646e-2641.96Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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