CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.627e-24
Identity = 67/162 (41.36%), Postives = 86/162 (53.09%), Query Frame = -2
Query:  153 DKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP-QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGD 635
            D  DLV+LSGAHTFG A C  F DR    +   + +P +D      LR  C     +G +    DV+TPD FDNKY+ +L  R+GL +SDQ L   P   T  +   F  NQ AFF+ F  SM +M N+  LTG +GEIR NC   N     +   S + GD
Sbjct:   13 DVADLVSLSGAHTFGVAHCPAFEDR----SSRVRHNPAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHP--TTKRMATRFSLNQGAFFEQFARSMTKMSNMDILTGTKGEIRNNCAVPNRRVRTSRPPSPARGD 168          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 61/145 (42.07%), Postives = 87/145 (60.00%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ--GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT G+A+C  F  R+Y+       +  +D +  K  +  CP   G     LA  D++TP  FDN Y+ NL  +KGLL SDQ L++  G  T + V+ +  N   F  +FV  MI+MG++ PLTG++GEIR +C +VN
Sbjct:  186 DMVALSGAHTIGQARCTSFRARIYN-------ETNIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYN--GGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEIRKSCGKVN 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.431e-24
Identity = 60/143 (41.96%), Postives = 89/143 (62.24%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSG+H+ G+ +C     RLY+ + +GKPDP ++ +  K+L +LCP GG+  V  + D  TP  FDN+YF +L   +G L SDQ L++     T   V+ F  +Q  FF+ F   M+++G+L+  +G  GEIR NCR VN
Sbjct:  182 DMVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPALEPSYRKKLDKLCPLGGDENVTGDLDA-TPQVFDNQYFKDLVSGRGFLNSDQTLYT--NLVTREYVKMFSEDQDEFFRAFAEGMVKLGDLQ--SGRPGEIRFNCRVVN 319          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_ARAHY (Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDF----GRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN + DLV L G HT G ++C+FFS+RL++FN T   DP +D + +  L+ LCPQ    A     D  +   FD  YFSNLR R+G+LQSDQ L++ P   T + V+ +    G     F   F  SM++M N+   TG  GEIR  C   N
Sbjct:  181 GLNTQ-DLVTLVGGHTIGTSECQFFSNRLFNFNGTAAADPAIDPSFVSNLQALCPQNTGAANRVALDTGSQFKFDTSYFSNLRNRRGVLQSDQALWNDP--STKSFVQRYLGLRGFLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSAFN 330          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER52_ARATH (Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 62/152 (40.79%), Postives = 89/152 (58.55%), Query Frame = -2
Query:  198 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ--GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 647
            VGL+ + D+VALSGAHT G+++C  F  R+Y+       +  ++       +  CP+  G     LA  DV T  +FDN YF NL  ++GLL SDQ LF+  G  T +IV  +  N ++F  +F  +MI+MG++ PLTG+ GEIR  C R N
Sbjct:  183 VGLSTR-DMVALSGAHTIGQSRCTNFRARIYN-------ETNINAAFATTRQRTCPRASGSGDGNLAPLDVTTAASFDNNYFKNLMTQRGLLHSDQVLFN--GGSTDSIVRGYSNNPSSFNSDFTAAMIKMGDISPLTGSSGEIRKVCGRTN 324          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALSGAHT G A C  FS R+Y+F+     DPT++     QLR++CP   +  +  N D  +P+ FDN YF NL+   GL  SDQ LFS     + + V  F  ++  F + F+ ++ ++G +   TGN GEIR +C RVN
Sbjct:  183 DMIALSGAHTIGFAHCGKFSKRIYNFSPKRPIDPTLNIRYALQLRQMCPIRVDLRIAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLFS--DERSRSTVNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER25_ARATH (Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = -2
Query:  198 DKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDF-----GRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 635
            D  DLV L GAHT G+  C FF  RLY+F  TG  DPT+  + L QL+ LCP  G+G+     D+ +P  FD  +F NLR    +L+SDQ L+S   A+T A+V+ +     G     F   F  +MI+M ++   T   GE+R  C +VN
Sbjct:  180 DTHDLVTLLGAHTIGQTDCLFFRYRLYNFTVTGNSDPTISPSFLTQLKTLCPPNGDGSKRVALDIGSPSKFDESFFKNLRDGNAILESDQRLWS--DAETNAVVKKYASRLRGLLGFRFDYEFGKAMIKMSSIDVKTDVDGEVRKVCSKVN 328          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER62_ARATH (Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = -2
Query:  198 DLVAL-SGAHTFGRAQCKFFSDRLYDFNKTGKP-DPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV L  G HT G A C F ++R+  FN +G   DPT+D+T + QL+ LCPQ G+G+   + D  + + FD  YF NL   +G+LQSD  L+++P   T +IV++F   +  F   F  SM++M N+   TG  GEIR  C  VN
Sbjct:  179 DLVTLVGGGHTIGTAACGFITNRI--FNSSGNTADPTMDQTFVPQLQRLCPQNGDGSARVDLDTGSGNTFDTSYFINLSRNRGILQSDHVLWTSPA--TRSIVQEFMAPRGNFNVQFARSMVKMSNIGVKTGTNGEIRRVCSAVN 319          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALSGAHT G A C    +R+Y FNKT K DPTV++  + +L+  CP+  +  V  N D  TP  FDN Y+ NL+  KGL  SDQ LF+     +   V+ +  N   F + F+ SMI++G +   TG+ G IR +C   N
Sbjct:  189 DMIALSGAHTLGFAHCTKVFNRIYTFNKTTKVDPTVNKDYVTELKASCPRNIDPRVAINMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFT--DRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER10_ARATH (Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = -2
Query:  210 DKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTV--DRTLLKQLRELCPQ-GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 635
            D  D+V LSGAHT G AQC     RL++F  +G+PDP +     LL +L++ CP    + + LA  D  +   FDN Y+ NL    GLL SDQ L + P A  AA+V+ +  N   F ++F +SM++MGN+  +TG+ G IR  C
Sbjct:  204 DLKDVVVLSGAHTIGFAQCFVIKHRLFNFKGSGQPDPNLAASSALLSKLKDTCPNVDSSDSKLAALDAASSVKFDNAYYVNLMNNIGLLDSDQTLMTDPTA--AALVKSYSENPYLFSRDFAVSMVKMGNIGVMTGSDGVIRGKC 346          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER2_HORVU2.627e-2441.36Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PER4_VITVI3.431e-2442.07Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER17_ARATH3.431e-2441.96Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER2_ARAHY4.482e-2441.83Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 ... [more]
PER52_ARATH1.304e-2340.79Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=... [more]
PER16_ARATH1.304e-2340.56Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER25_ARATH1.703e-2340.40Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=... [more]
PER62_ARATH2.224e-2342.07Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=... [more]
PER50_ARATH2.224e-2341.26Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER10_ARATH3.794e-2341.38Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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