CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAV-LANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DL  LSG HT G+++C+FF  R+Y+       D  +D       +  CP    G   LA  D  TP+ FDN Y+ +L   +GLL SDQ LF+    DT  +V  +  N   FF +F  ++++M  + PLTG  GEIR NCR +N
Sbjct:   24 DLTVLSGGHTIGQSECQFFKTRIYN-------DTNIDTNFATSRQANCPFSAGGETNLAPLDSLTPNRFDNNYYKDLVSNRGLLHSDQVLFNGGSQDT--LVRTYSTNNVKFFSDFAAAIVKMSKISPLTGIAGEIRKNCRVIN 158          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = -2
Query:  198 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ--GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 647
            VGL+ + D+VALSGAHT G+++C  F  R+Y+       +  ++       +  CP+  G   A LA  D+ +  +FDN YF NL  ++GLL SDQ LF+  G  T +IV  +  + ++F  +F  +MI+MG++ PLTG+ GEIR  C + N
Sbjct:  155 VGLSTR-DMVALSGAHTIGQSRCVNFRARVYN-------ETNINAAFATLRQRSCPRAAGSGDANLAPLDINSATSFDNSYFKNLMAQRGLLHSDQVLFN--GGSTDSIVRGYSNSPSSFNSDFAAAMIKMGDISPLTGSSGEIRKVCGKTN 296          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.459e-22
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALS AHT G A C    +R+Y+FN T   DPT+++   K+L+  CP+  +  +  N D  TP  FDN YF NL+  KGL  SDQ LF+     +   V D+ +N  AF K FV +M ++G +   T   G IR +C   N
Sbjct:  189 DMIALSAAHTLGFAHCGKVFNRIYNFNLTHAVDPTLNKAYAKELQLACPKTVDPRIAINMDPTTPRQFDNIYFKNLQQGKGLFTSDQVLFT--DGRSKPTVNDWAKNSVAFNKAFVTAMTKLGRVGVKTRRNGNIRRDCGAFN 329          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER11_ARATH (Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.212e-22
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLY-DFNKTGKPDPTVDRTLLKQLRELCP--QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELF-STPGADTAAIVEDFGRNQTAFFKNFVISMIRMGN-LKPLTGNQGEIRLNCRRVN 626
            D+VAL GAHT G+AQC+ F  R+Y DF  T   +P V  T L  LRE+CP   G   + +   D  TP+ FDN  +  L   +GLL SDQE++ S  G  T  IV  +  +  AFF+ F  SM++MGN L   +   GE+R NCR VN
Sbjct:  189 DMVALIGAHTIGKAQCRNFRSRIYGDFQVTSALNP-VSETYLASLREICPASSGEGDSNVTAIDNVTPNLFDNSIYHTLLRGEGLLNSDQEMYTSLFGIQTRRIVSKYAEDPVAFFEQFSKSMVKMGNILNSESLADGEVRRNCRFVN 335          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = -2
Query:  198 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRT-LLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQEL-FSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 653
            +N+GL+   D+VALSG HT G+A+C  F+ RL    +TG+P    D    L+ L++LC   G    +   D+ TP  FDN+Y+ NL   +GLL SDQ L    PG  T AIVE +  +Q+ FF++F  +M++MG +    G+  EIR NCR +N
Sbjct:  201 QNLGLSQT-DMVALSGGHTLGKARCTSFTARLQPL-QTGQPANHGDNLEFLESLQQLCSTVGPSVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPG--TRAIVETYATDQSVFFEDFKNAMVKMGGIP--GGSNSEIRKNCRMIN 348          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER55_ARATH (Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALSGAHT G + C  F++RL++F+     DPT+D    +QL + C      AV+ + D+ + D FDN Y+ NL  RKGL  SDQ LF+     + A V  F  N   F+  F  +M  +G +    GNQGEIR +C   N
Sbjct:  191 DMIALSGAHTIGSSHCNRFANRLHNFSTFMPVDPTMDPVYAQQLIQACSDPNPDAVV-DIDLTSRDTFDNSYYQNLVARKGLFTSDQALFN--DLSSQATVVRFANNAEEFYSAFSSAMRNLGRVGVKVGNQGEIRRDCSAFN 330          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 58/147 (39.46%), Postives = 86/147 (58.50%), Query Frame = -2
Query:  210 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 650
            N GLN + ++VALSG+HT G+A+C  F  R+Y  N T + +P  +R+L     + CP  GN A L   D+ TP++FDN Y+ NL   +GLL SDQ LF+    D  +IV ++  N   F  +F  +M++M  +  +TG  G +R  C
Sbjct:  180 NKGLNTR-EMVALSGSHTLGQARCIRFRGRIY--NSTLRIEPNFNRSL----SQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTD--SIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 58/147 (39.46%), Postives = 86/147 (58.50%), Query Frame = -2
Query:  210 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 650
            N GLN + ++VALSG+HT G+A+C  F  R+Y  N T + +P  +R+L     + CP  GN A L   D+ TP++FDN Y+ NL   +GLL SDQ LF+    D  +IV ++  N   F  +F  +M++M  +  +TG  G +R  C
Sbjct:  180 NKGLNTR-EMVALSGSHTLGQARCIRFRGRIY--NSTLRIEPNFNRSL----SQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTD--SIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ-----GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN   D+  L G+H+ GR  C +  DRLY++NKTGKP PT+++  L ++ + CP        +  V  N D  +  +F + ++S +   K +L+ DQ+L      DT  I ++F      F K+F +SM +MG +  LT  +GEIR +CR +N
Sbjct:  185 GLN-VLDMATLLGSHSMGRTHCSYVVDRLYNYNKTGKPSPTMNKYFLSEMAKQCPPRTRKGQTDPLVYLNPDSGSNHSFTSSFYSRILSNKSVLEVDQQLLYND--DTKQISKEFSEGFEDFRKSFALSMSKMGAINVLTKTEGEIRKDCRHIN 335          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 61/143 (42.66%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT G A+C  F  RL        PD ++D T    L + C  G N      FD    D FDN YF+ L+++ G+L SDQ LF+TP   T  +V  +  NQ  FF +F  +M +M NL    G+QGE+R NCR +N
Sbjct:  183 DVVALSGAHTLGVARCSSFKARLT------VPDSSLDSTFANTLSKTCSAGDNAE--QPFDATRND-FDNAYFNALQMKSGVLFSDQTLFNTPR--TRNLVNGYALNQAKFFFDFQQAMRKMSNLDVKLGSQGEVRQNCRSIN 314          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PERX_LUPPO1.442e-2238.89Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]
PERP7_BRARA2.459e-2238.82Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER73_ARATH2.459e-2239.86Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER11_ARATH3.212e-2243.92Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=... [more]
PER40_ARATH4.195e-2241.56Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER55_ARATH1.594e-2139.86Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=... [more]
PER2_ZINEL2.082e-2139.46Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV... [more]
PER1_ZINEL2.082e-2139.46Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV... [more]
PER26_ARATH4.638e-2135.71Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER47_ARATH7.911e-2142.66Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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