CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFF---KNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV L+  HT G A C  F DR ++++ TG PDPT+  + +  ++  CP  G+ A     D  + D FD  Y +NL+  +GLL+SDQ L++    +T  IVE     +  F      F  SM +M  ++  TG  GEIR  C  VN
Sbjct:  187 DLVVLAAGHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVLDTGSGDQFDTSYLNNLKNGRGLLESDQVLWT--NLETRPIVERLLGLRFPFLIFGLEFARSMTKMSQIEIKTGLDGEIRRVCSAVN 330          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = -2
Query:  201 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRV 626
            DLVALSG HT G A C  F +RL+ FN   + DPT++ +   +L  +CP         +    T  +FDN Y+  L   K L  SD+ L + P   T  +V  +  +   F + FV SMI+M +   ++GN  E+RLNCRRV
Sbjct:  180 DLVALSGGHTLGFAHCSSFQNRLHKFNTQKEVDPTLNPSFAARLEGVCPAHNTVKNAGSNMDGTVTSFDNIYYKMLIQGKSLFSSDESLLAVP--STKKLVAKYANSNEEFERAFVKSMIKMSS---ISGNGNEVRLNCRRV 316          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = -2
Query:  189 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANF-DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 626
            ++VALSGAHT G + CK FSDRLY      + D  ++      L++LC        +A F DV TP  FDN YF NL+   GLL SD  L       T   V+ +  N+TAFF++F  +M ++G +       GE+R  C   N  N
Sbjct:  193 EMVALSGAHTIGFSHCKEFSDRLYG----SRADKEINPRFAAALKDLCKNHTVDDTIAAFNDVMTPGKFDNMYFKNLKRGLGLLASDHILIK--DNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRRCDHFNNLN 333          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER43_ARATH (Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFF-----KNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GLN K DLV LS AHT G   C F S RLYDF   G+PDPT++ T L +L   CPQ G+  V    D  +   FD +   N++    +LQ+D  L+      T  +V+ +      FF      +FV ++++MG +   TG +GEIR  C   N
Sbjct:  176 GLNAK-DLVLLSAAHTIGTTACFFMSKRLYDFLPGGQPDPTINPTFLPELTTQCPQNGDINVRLPIDRFSERLFDKQILQNIKDGFAVLQTDAGLYE--DVTTRQVVDSYLGMLNPFFGPTFESDFVKAIVKMGKIGVKTGFKGEIRRVCSAFN 326          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGN-----GAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            GL+ K D+V LSG HT G + C  F  RL +F+K    DP+++    + L++ CP+  N     G VL +    T   FDN Y+  +   KG+  SDQ L     + T  IVE F ++Q AFF+ F  SM+++GN        G++R+N R VN
Sbjct:  178 GLSVK-DMVTLSGGHTIGFSHCSSFESRLQNFSKFHDIDPSMNYAFAQTLKKKCPRTSNRGKNAGTVLDS----TSSVFDNVYYKQILSGKGVFGSDQALLG--DSRTKWIVETFAQDQKAFFREFAASMVKLGNFG--VKETGQVRVNTRFVN 322          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  210 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLR-ELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDF-GRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 653
            +N GLN K DLV LSGAHT G + C   + RLY+F+ T K DP++D      L+   C    + + +   D  +  +FD  Y+  +  R+GL QSD  L  T  + T  ++ D    ++  FFK F  SM +MG +K  TG+ G IR  C
Sbjct:  178 KNQGLNLK-DLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSAL--TTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRC 324          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.063e-17
Identity = 56/152 (36.84%), Postives = 77/152 (50.66%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLR-ELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            N GL+ K DLV LSGAHT G + C  FS+RL++F   G  DP++D      L+   C    +       D  + + FD  Y+  +  R+GL +SD  L   P A  A +    G ++  FF  F  SM +MG +   TG+ GEIR  C  VN
Sbjct:  177 NQGLDVK-DLVLLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLSIADNTTKVEMDPGSRNTFDLSYYRLVLKRRGLFESDAALTMNPAA-LAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.063e-17
Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  141 DLVALSGAHTFGRAQCKFFSDRLYDFNK---TGKPDPTVDRTLLKQLRELCPQGGNGA--VLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGDLVSS 626
            D+V LSGAHT GR+ C  F  R+++ +    T   D  +  +  + LR LCP        +    D  TP+  DN Y+  L    GL  SD +L   P    AA+V  F  N+T + + F  +M++MG ++  TG  GE+RLNC    G  N +  SSSS  +L SS
Sbjct:  194 DMVVLSGAHTVGRSFCASFFKRVWNTSTNPATAIVDAGLSPSYAQLLRALCPSNTTQTTPITTAMDPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNP--QMAALVSSFASNETLWKEKFAAAMVKMGRIQVQTGTCGEVRLNC----GVVNPSLYSSSSAVELGSS 354          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 52/146 (35.62%), Postives = 73/146 (50.00%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVE---DFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV L G HT G A C     R  +FN TG+PDP++D + +  +   CPQ  NG      D  + D FD  +   +   + +LQSD  L+  P  +T AI+E      R    F   F  SM++M  ++  TG+ GEIR  C  +N
Sbjct:  190 DLVTLVGGHTIGTAGCGLVRGRFVNFNGTGQPDPSIDPSFVPLILAQCPQ--NGGTRVELDEGSVDKFDTSFLRKVTSSRVVLQSDLVLWKDP--ETRAIIERLLGLRRPSLRFGTEFGKSMVKMSLIEVKTGSDGEIRRVCSAIN 331          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPT-VDRTLLKQLRELCPQGGNGAVLANF-DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            ++VAL GAHT G + CK F+ R+  FNK+ +  P  ++     +LR+LC    N   ++ F DV TP  FDN Y+ NL+   GLLQSD  +       T ++V+ +  ++TAFF  F  +M ++      TG  GE+R  C + N
Sbjct:  182 EMVALVGAHTIGFSHCKEFASRI--FNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNLKHGYGLLQSDHAI--AFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER70_ARATH1.650e-1836.99Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER64_ARATH2.814e-1838.03Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER65_ARATH3.675e-1838.10Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PER43_ARATH4.799e-1837.66Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=... [more]
PER66_ARATH1.069e-1737.01Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER30_ARATH1.396e-1737.33Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER39_ARATH4.063e-1736.84Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER1_MAIZE4.063e-1735.93Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER69_ARATH2.016e-1635.62Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER6_ARATH5.867e-1636.55Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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