CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 53/152 (34.87%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  198 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLR-ELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 650
            N GL+ K DLV LSGAHT G + C  F++RLY+F   G  DP +D      L+   CP   +   +   D  +   FD  Y+  +  R+GL QSD  L + P    + I      +  +FF  F  SM +MG +   TG+ G +R  C   N
Sbjct:  176 NQGLDLK-DLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCPSLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNP-TTLSNINRILTGSVGSFFSEFAKSMEKMGRINVKTGSAGVVRRQCSVAN 325          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  210 NVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELF----STPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNC 650
            N GLN K DLV LSG HT G + C   + RLY+F   G  DP+++ + +++L+  CP       L N D  +   FD  YF  +  +KGL  SD  L     +     T AI+       ++F K+F  SM+++G ++ LTG  GEIR  C
Sbjct:  176 NKGLNAK-DLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCPPTDFRTSL-NMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPV---FSSFNKDFSDSMVKLGFVQILTGKNGEIRKRC 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.307e-15
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANF-DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            ++VALSGAH+ G + CK F  R+      G+ +   +      L++ C        ++ F D+ TP+ FDN Y+ NL+   GLL+SD  L+S P   T   V+ + +NQ  FFK+F  +M ++      TG +GEIR  C  +N
Sbjct:  181 EMVALSGAHSIGFSHCKEFVGRV------GRNNTGYNPRFAVALKKACANYPKDPTISVFNDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDP--RTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 53/144 (36.81%), Postives = 70/144 (48.61%), Query Frame = -2
Query:  198 VALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ---GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 620
            VAL GAH+ GR  C     RLY        DPT+D +    L++ CP      N  + +  D +TP   DN Y+ N+   KGLL  D EL + P   TA  V     +   F + F   +  +    PLTG+QGEIR +CR VN
Sbjct:  191 VALLGAHSVGRVHCVNLVHRLYP-----TIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPR--TAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 49/157 (31.21%), Postives = 83/157 (52.87%), Query Frame = -2
Query:  192 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGG--NGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLT-GNQGEIRLNCRRVNGN 653
            R + LND   +V L G HT G   C F  DRLY+F  T KPDP++D  L+++L   CP+    +G +  + +  + +  D  ++  +++ +G+L  DQ+L       T+ +V D   N   F   F  +M+ +G+++ ++    GEIR +CR    N
Sbjct:  177 RKLSLND---MVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCPKSSSTDGIISLDQNATSSNTMDVSFYKEIKVSRGVLHIDQKL--AIDDLTSKMVTDIA-NGNDFLVRFGQAMVNLGSVRVISKPKDGEIRRSCRSTCNN 327          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKP--DPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV LSGAHT G + C  F+ R    +K      D ++D +  + L   C    + ++  + D +T   FDN+Y+ NL   KGL Q+D  L       T  +VE+   ++ +FF+ +  S +++  +    G  GEIR +C  VN
Sbjct:  184 DLVVLSGAHTIGASHCNAFNGRFQRDSKGNFEVIDASLDNSYAETLMNKCSSSESSSLTVSNDPETSAVFDNQYYRNLETHKGLFQTDSALME--DNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 48/152 (31.58%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  198 RNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 653
            +++G N    +  + G HT G A C  F DR+         DP +D  L  +L++ C    + +V    D  TP   DN+ +  +  ++ +L+ D  L       T +IV DF  N   F ++F  +M +MG +  LTG+ GEIR NCR  N
Sbjct:  170 KSIGFNVSTMVALIGGGHTVGVAHCSLFQDRI--------KDPKMDSKLRAKLKKSCRGPNDPSVF--MDQNTPFRVDNEIYRQMIQQRAILRIDDNLIRD--GSTRSIVSDFAYNNKLFKESFAEAMQKMGEIGVLTGDSGEIRTNCRAFN 309          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = -2
Query:  198 GLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGAD--TAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 644
            G+N    +  + G H+ G A C  F DRL         D  ++ +L   LR  C    +       D KT    DN  +  +R ++G+L+ DQ L    G D  T+ IV  +  + T F K F  ++++MG +K LTG  GEIR NCR  N
Sbjct:  173 GMNTNDMVTLIGGGHSVGVAHCSLFQDRL--------SDRAMEPSLKSSLRRKCSSPNDPTTF--LDQKTSFTVDNAIYGEIRRQRGILRIDQNL----GLDRSTSGIVSGYASSNTLFRKRFAEALVKMGTIKVLTGRSGEIRRNCRVFN 309          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKP---DPTVDRTLLKQLRELCPQGGNGAV-LANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLV LSGAHT G A C  F+ R +  +  G     D ++D +  + L   C    +    + + D +T   FDN+Y+ NL   KGL Q+D  L       T  IVE    +Q +FF  +  S ++M  +    G +GEIR +C  VN
Sbjct:  186 DLVVLSGAHTIGAAHCNTFNSR-FKLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVVDNDPETSSTFDNQYYKNLLAHKGLFQTDSALMEDDR--TRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAVN 329          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 53/143 (37.06%), Postives = 70/143 (48.95%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            ++VAL+GAHT G A+C            +G  +P        QL+  C      + L   D  TP  FD  Y+ NL   +G++ SDQ L  T    TA  V  +  N T F ++F  +MI+MGNL P  G Q EIR  C RVN
Sbjct:  230 EMVALAGAHTVGFARCSTVCT-------SGNVNPAA------QLQCNCSATLTDSDLQQLDT-TPAVFDKVYYDNLNNNQGIMFSDQVL--TGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVN 356          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PER3_ARATH7.662e-1634.87Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER1_ARATH1.001e-1536.42Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER31_ARATH1.307e-1534.72Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER21_ARATH2.229e-1536.81Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER60_ARATH4.967e-1531.21Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER46_ARATH6.487e-1531.72Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER8_ARATH1.106e-1431.58Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER44_ARATH1.106e-1433.11Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER18_ARATH9.367e-1434.01Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER2_SOLLC1.598e-1337.06Suberization-associated anionic peroxidase 2 OS=So... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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