CF835294

Overview
NameCF835294
Unique NameCF835294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig723 contig Csv1_Contig723:1..399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   98 MPIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            +P+ ++ +G  GEA  P  L+A   E     +FVF G  S +   K   GGA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHITL R
Sbjct:    4 LPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFR 104          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.614e-14
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            ++ +G  GEAS PD  +  L E     +FVF G G+ M     T G  ST  G L + +L  A  + V  + G +ISGGHVNPAVT    VGGH+TL R
Sbjct:    3 KLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMTDGATTKG--STAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFR 99          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.576e-14
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  146 PDALKAGLAEFFSMLIFVFAGQGSGMAFSKL-TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            P A +A L+EF +  +FVFA +GS     K+  D G  T  GL+  ++AHA AL  AV+V  N SGGHVNPAVTFG  VG  I+  R
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTG--TLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFAR 109          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.133e-13
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  152 ALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAG-LISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHI 391
            +L++ LAEF S  +FVF   GS ++   LT    ++ AG L++ ++A AF LF AV + A++SGGHVNPAVTF   +GG I
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRI 98          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  149 DALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITL 397
            +AL+  ++EF S   FV A  GS M+  KL  G  S P G++  ++A+A AL  +V +  N+SGGHVNPAVTF   V G I++
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISV 102          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  134 EASHPDA--LKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            EA  PD   ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLR 108          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.448e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  155 LKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTP-AGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            ++A LAE     +FVF G  + MA       G + P A L + ++AHA A  V V+ G ++SGGH+NPAVT G  V GHIT LR
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLR 106          
The following BLAST results are available for this feature:
BLAST of CF835294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TIP42_ORYSJ1.930e-1440.20Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE5.614e-1443.43Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP32_ORYSJ9.576e-1449.43Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE2.133e-1346.91Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP51_ARATH3.081e-1244.58Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP42_MAIZE8.963e-1245.16Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_MAIZE4.448e-1145.24Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835294 ID=CF835294; Name=CF835294; organism=Citrus sinensis; type=EST; length=403bp
GCAATATAACCCCTATAGAAANACNGAGCCAGCAAGCTTGTAAGAAGCCT
TCCCTTCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCGATAAAAATG
CCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGA
TGCGTTAAAGGCGGGGCTAGCTGAGTTTTTCTCAATGCTTATTTTTGTTT
TCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGG
GCGTCCACACCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGC
CCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGA
ACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTG
AGG
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