CF835305

Overview
NameCF835305
Unique NameCF835305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 53/109 (48.62%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 53/109 (48.62%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 53/109 (48.62%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.120e-25
Identity = 53/109 (48.62%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.120e-25
Identity = 53/109 (48.62%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 53/109 (48.62%), Postives = 81/109 (74.31%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+EE++++++++D + DG+I+++EF+K+M
Sbjct:   50 GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 52/109 (47.71%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   49 GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            G  P + E++ MI+EVD +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   61 GFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 54/106 (50.94%), Postives = 81/106 (76.42%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            G NPT+ EL+D+  E+D DG+G +DF +F +LM RKMK +DSE ++K+AF+VFDK  NG+ +  +L+H +T++GEKLT EE D M+++A    DGQI+ +EFV+V+
Sbjct:   39 GSNPTQQELKDIAKEID-DGSGLVDFSKFSSLMTRKMKYSDSEADIKQAFKVFDKKGNGYANIQDLKHTLTSIGEKLTKEEFDNMLKDAKT-VDGQIHVDEFVRVI 142          
BLAST of CF835305 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24
Identity = 53/109 (48.62%), Postives = 79/109 (72.48%), Query Frame = -1
Query:  340 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 657
            GQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   48 GQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
The following BLAST results are available for this feature:
BLAST of CF835305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 390
Match NameE-valueIdentityDescription
TNNC1_PIG2.389e-2548.62Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE2.389e-2548.62Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN2.389e-2548.62Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_RABIT3.120e-2548.62Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN3.120e-2548.62Troponin C, slow skeletal and cardiac muscles OS=H... [more]
TNNC2_MELGA5.322e-2548.62Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
TNNC1_CHICK5.322e-2547.71Troponin C, slow skeletal and cardiac muscles OS=G... [more]
CETN1_HUMAN5.322e-2550.94Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
CALML_DICDI5.322e-2550.94Calmodulin-like protein OS=Dictyostelium discoideu... [more]
TNNC2_RABIT1.186e-2448.62Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835305 ID=CF835305; Name=CF835305; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTTTTTTTTAGAGGAAAAACATTAAGTCATCACATATCAATTT
CTTATCCACAAAATCTCGAAATAAGAAATAGGGCAGATCAACGAGTCACT
CATTTAACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATT
AAAAAATTGCTCAAAAGATCCCGCCCCCAGATAAATTGAAGCAGGAGACA
ACATGCTTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAA
AAAGGAAACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCC
CAGGAAGTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGA
CAAATTCCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTT
ATCATCTCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCAT
CACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGA
AAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATC
TTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACC
ATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGT
TCTGACC
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