CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9834 contig Csv1_Contig9834:136..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G ITT+E G V+RSLG N T+AELQ+ IN+ D DG GTI+F EFL  MA   KDT SE++LK+ FR+FD D+NGFISAAE+R+V T L  K TDEE+DE+I+ ADVDGDGQINY EF ++MMAK
Sbjct:   25 DGHITTEEFGAVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAMA---KDTYSEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDGDGQINYREFARLMMAK 146          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34
Identity = 70/127 (55.12%), Postives = 99/127 (77.95%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F +   G I++ EL TV+RSLG +P+EAE+ D++NE+D DG   I+F EFL LM+R++K  DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVD+M+RE   DG G+IN ++F  ++
Sbjct:   20 FDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34
Identity = 71/127 (55.91%), Postives = 98/127 (77.17%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F +   G I+  EL TV+RSLG +P+EAE+ D++NE+D DG   I+F EFL LM+R++K  DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVDEM+RE   DG G+IN ++F  ++
Sbjct:   20 FDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34
Identity = 69/127 (54.33%), Postives = 97/127 (76.38%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDS---EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            +GCI+ +EL TVL  LG  P++ +LQDMI  VD DG GTI+F EFL +M +K+ + D    EEEL++AFR+FDKD NGFIS  EL  VM +LGE++T++E+D+M++ AD + DGQ++YEEF +VMM+
Sbjct:   25 DGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMMS 151          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = 2
Query:  152 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            L +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 64/125 (51.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 64/125 (51.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.859e-32
Identity = 64/125 (51.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 64/125 (51.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 64/125 (51.20%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CML10_ARATH1.465e-3664.00Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]
CALM_YEAST1.371e-3455.12Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CALM_KLULA2.339e-3455.91Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
CML6_ORYSJ3.989e-3454.33Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CALM_STRPU1.516e-3385.00Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
TNNC1_PIG2.859e-3251.20Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE2.859e-3251.20Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN2.859e-3251.20Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_RABIT3.734e-3251.20Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN3.734e-3251.20Troponin C, slow skeletal and cardiac muscles OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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