CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+TKELGTV+R LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FDK+ +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   35 GDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 63/125 (50.40%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 64/124 (51.61%), Postives = 94/124 (75.81%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+TKELGTV+R LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+EE++++++++D + DG+I+++EF+K+M
Sbjct:   35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 61/125 (48.80%), Postives = 96/125 (76.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +GCI+TKELG V+R LGQNPT  ELQ+MI+EVD DG+GT+DF +FL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ + + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 63/124 (50.81%), Postives = 94/124 (75.81%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+TKELGTV+R LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+E+++++++++D + DG+I+++EF+K+M
Sbjct:   36 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   + +LG  P + E+Q MI+++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD DQ G I+   L+ V   LGE LTDEE+ EMI EAD DGDG+IN EEF ++M
Sbjct:   22 GTIDAKELKVXMXALGFEPKKEEIQKMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 76/142 (53.52%), Postives = 92/142 (64.79%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMA---------RKMKDT--------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G IT KEL TV+ SLG+N T+A+LQDM+NEVD DG GTIDFPEFL LMA         R  K T        D   E +EAFRVFDK+ +G+I+  ELR  M +LGE  T  E+ +MI EAD DGDG I++ EFV VM  K
Sbjct:  114 DGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGK 255          

HSP 2 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM---------------KDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT KELGT++RS+G+ PT+A+LQD++NE D DG GTIDFPEFL +MA+                 K TD +  E +E+FR+FDK+ +G I+  ELR VM +LG+  T  ++ +M+ E D+DGDG I++ EF+ +M
Sbjct:   25 DGSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLM 162          

HSP 3 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQ 235
            +G IT  EL T +RSLG+  T+AELQDMINE DADG GTI F EF+ +M  KM DT S+   KE +RV ++ Q
Sbjct:  204 DGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGKMIDTQSK---KETYRVVNQGQ 273          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 64/127 (50.39%), Postives = 96/127 (75.59%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F +  +G IT +ELG V+RS+G NPT+ EL+D+  E+D DG+G +DF +F +LM RKMK +DSE ++K+AF+VFDK  NG+ +  +L+H +T++GEKLT EE D M+++A    DGQI+ +EFV+V+
Sbjct:   18 FDKDKDGKITIQELGIVMRSVGSNPTQQELKDIAKEID-DGSGLVDFSKFSSLMTRKMKYSDSEADIKQAFKVFDKKGNGYANIQDLKHTLTSIGEKLTKEEFDNMLKDAKT-VDGQIHVDEFVRVI 142          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 63/124 (50.81%), Postives = 91/124 (73.39%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+ KELGTV+R LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   33 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 63/124 (50.81%), Postives = 91/124 (73.39%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+ KELGTV+R LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   32 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TNNC2_RANES6.369e-3252.42Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
TNNC1_CHICK6.369e-3250.40Troponin C, slow skeletal and cardiac muscles OS=G... [more]
TNNC2_MELGA5.392e-3151.61Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
TNNC1_COTJA5.392e-3148.80Troponin C, slow skeletal and cardiac muscles OS=C... [more]
TNNC2_CHICK1.201e-3050.81Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
CATR_SPESI1.569e-3053.72Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
CML12_ARATH2.676e-3053.52Calmodulin-like protein 12 OS=Arabidopsis thaliana... [more]
CALML_DICDI2.676e-3050.39Calmodulin-like protein OS=Dictyostelium discoideu... [more]
TNNC2_RABIT4.564e-3050.81Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG4.564e-3050.81Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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