CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 64/124 (51.61%), Postives = 92/124 (74.19%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+TKELGTV+R LGQNPT  EL  +I EVD DG+GTIDF EFL +M R++K+     SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   33 GDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.961e-30
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   22 GTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 142          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.961e-30
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI ++D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   42 GTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 62/124 (50.00%), Postives = 91/124 (73.39%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+ KELGTV+R LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:   33 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+ KELGTV+R LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   33 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+EVD +GTG I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   46 GTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+EVD + TG I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:   46 GTIDVKELKVAMRALGFEPRKEEMKKMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 58/121 (47.93%), Postives = 87/121 (71.90%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+E+D +GTG ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   46 GTIDIKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+E+D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D +G I+  +LR V   LGE LT+EE+ EMI EAD + D +I+ +EF+++M
Sbjct:   43 GTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 57/121 (47.11%), Postives = 87/121 (71.90%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+E+D +GTG ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE L+DEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   46 GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TNNC2_ANGAN4.564e-3051.61Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
CATR_TETST5.961e-3052.07Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_SCHDU5.961e-3052.07Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
TNNC2_MOUSE1.328e-2950.00Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC2_HUMAN1.734e-2950.00Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
CETN1_HUMAN2.959e-2951.24Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
CETN1_MOUSE8.608e-2951.24Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CETN2_MOUSE2.505e-2847.93Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CATR_CHLRE2.505e-2849.59Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CETN2_BOVIN5.580e-2847.11Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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