CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML13_ARATH (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G I   ELG ++RSLG NPT+A+L+ +I   +   +   DF  FL+LMA+ +K    + +L++AF+V DK+  GF++ A+LRH++T++GEKL   E DE I+E DV  DG+I YE+F+  M+AK
Sbjct:   26 DGKIAPSELGILMRSLGGNPTQAQLKSIIASENL--SSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML9_ARATH (Calmodulin-like protein 9 OS=Arabidopsis thaliana GN=CML9 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            +G IT ++L  V++S+G+NP   +LQ M+++VD  G G I F +FL +MA+      + +EL E FRVFD+D +G IS  EL   M ++G K+T EE + M+READ+DGDG +++ EF K+M+A
Sbjct:   25 DGFITKEKLTKVMKSMGKNPKAEQLQQMMSDVDIFGNGGITFDDFLYIMAQNTSQESASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFSKMMIA 148          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CATR_NAEGR (Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  KEL   +R+LG  P + E++ MI+ +D +G+G IDF +FL LM  KM + DS  E+ +AFR+FD+D +GFI+ A L+ V  +LGE +TDEE+ EMI EAD    GQI+ E+F+++M
Sbjct:   47 GKIDAKELKVAMRALGFEPKKEEIKKMISGID-NGSGKIDFNDFLQLMTAKMSEKDSHAEIMKAFRLFDEDDSGFITFANLKRVAKDLGENMTDEELREMIEEADRSNQGQISKEDFLRIM 166          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  +ELG  L++ G+N +EA+L+ +I+EVD+DG G I F EFL   A+K +     E+L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:   26 GTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFLTA-AKKARA--GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_HALRO (Troponin C, body wall muscle OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 62/129 (48.06%), Postives = 86/129 (66.67%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTD-------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I++KELG V++ LGQNPTE +LQ+MI EVD DG+GTIDF EF  +M R+M+  +        E+EL EAFR+FD D +G     EL+  +   GE +   EVDEM+ + D + D QI+YEE+V +M
Sbjct:   25 DGTISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEFCLMMYRQMQAQEEAKIPEREEKELSEAFRLFDLDGDGI--GDELKAALDGTGENVETWEVDEMMADGDKNHDSQIDYEEWVTMM 151          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I T  +GT+L  LG    +A L D+I EVD DG+G I+F EF  L AR + + D+E    ELKEAFR++DK+ NG+I+   LR ++  L +KLT++++D MI E D DG G ++++EF++VM
Sbjct:   26 GYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVM 149          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM---KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            F R  +G +T  ELG++LRSLG  P+  EL  +I   D +  G I+F EF+ L+A ++   +   SE++++  F +FD+D NGFI+AAEL H M  LG  LT +E+  MI+EAD DGDG+I+++EF + + A
Sbjct:   72 FDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITA 203          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 59/133 (44.36%), Postives = 87/133 (65.41%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM----KDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F R  +G +T  ELG++LR+LG  P+  + + +I++ D    G ++FPEF+ L++ ++    K T   +EE+L   FR+FD D NGFI+AAEL H M  LG  LT  E+  MI+EAD DGDG+IN++EF K +
Sbjct:   24 FDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKADTKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAI 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 52/126 (41.27%), Postives = 86/126 (68.25%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I   ++G +LR++GQ   E +L+ +I E DADG+G I+F EF     N +     D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   32 KGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 58/125 (46.40%), Postives = 88/125 (70.40%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I+TKELGT+++ LG + +  ELQ MI+EVD D +GTIDF EFL +MAR M+D++ E   +EL+ AFRV DK+ +GFI   E R + +   G+ LTD+E+ E + + D + DG+ +YEE+ +++
Sbjct:   32 GDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CML13_ARATH8.908e-2644.80Probable calcium-binding protein CML13 OS=Arabidop... [more]
CML9_ARATH1.519e-2545.16Calmodulin-like protein 9 OS=Arabidopsis thaliana ... [more]
CATR_NAEGR1.519e-2547.93Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1[more]
CALL5_HUMAN2.592e-2549.59Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
TNNC_HALRO3.385e-2548.06Troponin C, body wall muscle OS=Halocynthia roretz... [more]
TNNC1_DROME7.541e-2545.97Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]
CML11_ORYSJ7.541e-2543.94Probable calcium-binding protein CML11 OS=Oryza sa... [more]
CML17_ARATH1.680e-2444.36Probable calcium-binding protein CML17 OS=Arabidop... [more]
TNNC2_CAEEL2.866e-2441.27Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
TNNC_BRALA4.888e-2446.40Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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