CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_PATYE (Troponin C OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 51/124 (41.13%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            EG ++ K+LG + +SLG    + +++D  +E+D + TG ++   ++ L  RK+K+   E ELKEAFRV DK++ G I    LR ++++LG++LT+EE++ MI E D DG G ++YEEF  +MM+
Sbjct:   26 EGTVSCKDLGAIFKSLGLLVKDDKIKDWSDEMDEEATGRLNCDAWIQLFERKLKEDLDERELKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEEEIENMIAETDTDGSGTVDYEEFKCLMMS 149          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I   EL   +RSLG      ++ +++ EVD + +G IDF EF+++M  K  + DS +EL +AF++ D D NG IS  +++ +   LGE  TD +++EMI EAD D DG++N EEF+K+M
Sbjct:   41 GSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMM 161          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 55/123 (44.72%), Postives = 85/123 (69.11%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G +T  ELG++LRSLG  P++ +L  +I + D +  G ++F EF+ L+   + K   ++++LK  FR+FD+D NG+I+AAEL H M  LG  LT EE+  MI+EAD DGDG I+++EFV+ +
Sbjct:   33 DGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CAM2_SCHPO (Myosin 1 light chain cam2 OS=Schizosaccharomyces pombe GN=cam2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G I T  +G+VLRSLG N T+AEL  + NE+       ID  +F++ ++ K+++T+SEEE  +AFRVFDKD +G+I  A+    M  LGEKL+D EV  M++EAD    G  +Y +FV+ +MAK
Sbjct:   23 DGLIPTSHVGSVLRSLGINVTDAELAKLSNELG----DAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_TODPA (Troponin C OS=Todarodes pacificus PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.168e-23
Identity = 49/123 (39.84%), Postives = 80/123 (65.04%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385
            EG ++ KEL  + +SL  + ++ +LQ  ++E+D D TG I + +F  L  RK+++ + E EL+ AFRV DK+  G I   +LR ++ +LG+ L D+E+ +MI E D DG G ++YEEF  +M+
Sbjct:   25 EGAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATGVIRWEKFKILFERKVQEDEDERELRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQDMINETDTDGSGTVDYEEFSALML 147          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.168e-23
Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385
            +G I   EL T LRSLGQN  EAE +  + +  A G G      IDF  FL++ ARKM+   +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:   25 DGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_PONLE (Troponin C, isotype alpha OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 52/125 (41.60%), Postives = 83/125 (66.40%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT + +G +LR +G   +E  LQ +I+E D DG+G I+F EF  L A+ + + D E   +ELKEAFR++D+  +G+I+   LR ++  L  +LT++ +DE+I E D DG G I++ EF+K+M
Sbjct:   24 KGFITPETVGIILRMMGVKISERHLQQVISETDEDGSGEIEFEEFAELAAKFLSEEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGTIDFMEFMKMM 148          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_HOMAM (Troponin C, isoform 1 OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 51/125 (40.80%), Postives = 82/125 (65.60%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT   +G +LR +G   ++  LQ++I+E D DG+G I+F EF  L A+ + + D E   +ELKEAFR++D+  NG+I+   L+ ++  L  KLT++ +D +I E D DG G I++ EF+K+M
Sbjct:   24 KGFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGTIDFNEFMKMM 148          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNCA_HOMAM (Troponin C, isoform 2A OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 50/125 (40.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT + +G +LR +G   +E  LQ++I E D DG+G ++F EF+ L A+ + + D E    EL+EAFRV+DK+ NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   24 KGFITPETVGVILRMMGVKISEKNLQEVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMEMM 148          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNCB_HOMAM (Troponin C, isoform 2B OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 49/125 (39.20%), Postives = 84/125 (67.20%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT + +G +LR +G   +E  LQ++I+E D DG+G ++F EF+ L A+ + + D E    EL+EAFRV+D+  NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   24 KGFITPETVGVILRMMGVKISEKNLQEVISETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMQMM 148          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
TNNC_PATYE6.384e-2441.13Troponin C OS=Patinopecten yessoensis PE=1 SV=1[more]
CML19_ARATH8.338e-2442.15Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
CML18_ARATH8.338e-2444.72Probable calcium-binding protein CML18 OS=Arabidop... [more]
CAM2_SCHPO1.422e-2345.60Myosin 1 light chain cam2 OS=Schizosaccharomyces p... [more]
TNNC_TODPA3.168e-2339.84Troponin C OS=Todarodes pacificus PE=1 SV=3[more]
CML9_ORYSJ3.168e-2346.09Probable calcium-binding protein CML9 OS=Oryza sat... [more]
TNNC1_PONLE5.404e-2341.60Troponin C, isotype alpha OS=Pontastacus leptodact... [more]
TNNC1_HOMAM7.058e-2340.80Troponin C, isoform 1 OS=Homarus americanus PE=1 S... [more]
TNNCA_HOMAM1.204e-2240.00Troponin C, isoform 2A OS=Homarus americanus PE=1 ... [more]
TNNCB_HOMAM2.682e-2239.20Troponin C, isoform 2B OS=Homarus americanus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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