CF835306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_PATYE (Troponin C OS=Patinopecten yessoensis PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24 Identity = 51/124 (41.13%), Postives = 84/124 (67.74%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388 EG ++ K+LG + +SLG + +++D +E+D + TG ++ ++ L RK+K+ E ELKEAFRV DK++ G I LR ++++LG++LT+EE++ MI E D DG G ++YEEF +MM+ Sbjct: 26 EGTVSCKDLGAIFKSLGLLVKDDKIKDWSDEMDEEATGRLNCDAWIQLFERKLKEDLDERELKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEEEIENMIAETDTDGSGTVDYEEFKCLMMS 149
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24 Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 2 Query: 20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 G I EL +RSLG ++ +++ EVD + +G IDF EF+++M K + DS +EL +AF++ D D NG IS +++ + LGE TD +++EMI EAD D DG++N EEF+K+M Sbjct: 41 GSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMM 161
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24 Identity = 55/123 (44.72%), Postives = 85/123 (69.11%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 +G +T ELG++LRSLG P++ +L +I + D + G ++F EF+ L+ + K ++++LK FR+FD+D NG+I+AAEL H M LG LT EE+ MI+EAD DGDG I+++EFV+ + Sbjct: 33 DGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CAM2_SCHPO (Myosin 1 light chain cam2 OS=Schizosaccharomyces pombe GN=cam2 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23 Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391 +G I T +G+VLRSLG N T+AEL + NE+ ID +F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M++EAD G +Y +FV+ +MAK Sbjct: 23 DGLIPTSHVGSVLRSLGINVTDAELAKLSNELG----DAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC_TODPA (Troponin C OS=Todarodes pacificus PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 3.168e-23 Identity = 49/123 (39.84%), Postives = 80/123 (65.04%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385 EG ++ KEL + +SL + ++ +LQ ++E+D D TG I + +F L RK+++ + E EL+ AFRV DK+ G I +LR ++ +LG+ L D+E+ +MI E D DG G ++YEEF +M+ Sbjct: 25 EGAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATGVIRWEKFKILFERKVQEDEDERELRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQDMINETDTDGSGTVDYEEFSALML 147
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.168e-23 Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385 +G I EL T LRSLGQN EAE + + + A G G IDF FL++ ARKM+ +E+EL VFD ++G I A +LR M + G++LT+EE DEM+R+AD G+G++ Y+EFVKV+M Sbjct: 25 DGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_PONLE (Troponin C, isotype alpha OS=Pontastacus leptodactylus PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23 Identity = 52/125 (41.60%), Postives = 83/125 (66.40%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 +G IT + +G +LR +G +E LQ +I+E D DG+G I+F EF L A+ + + D E +ELKEAFR++D+ +G+I+ LR ++ L +LT++ +DE+I E D DG G I++ EF+K+M Sbjct: 24 KGFITPETVGIILRMMGVKISERHLQQVISETDEDGSGEIEFEEFAELAAKFLSEEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGTIDFMEFMKMM 148
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNC1_HOMAM (Troponin C, isoform 1 OS=Homarus americanus PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23 Identity = 51/125 (40.80%), Postives = 82/125 (65.60%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 +G IT +G +LR +G ++ LQ++I+E D DG+G I+F EF L A+ + + D E +ELKEAFR++D+ NG+I+ L+ ++ L KLT++ +D +I E D DG G I++ EF+K+M Sbjct: 24 KGFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGTIDFNEFMKMM 148
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNCA_HOMAM (Troponin C, isoform 2A OS=Homarus americanus PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22 Identity = 50/125 (40.00%), Postives = 84/125 (67.20%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 +G IT + +G +LR +G +E LQ++I E D DG+G ++F EF+ L A+ + + D E EL+EAFRV+DK+ NG+I+ L+ ++ L +LT+E++D +I E D DG G +++ EF+++M Sbjct: 24 KGFITPETVGVILRMMGVKISEKNLQEVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMEMM 148
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: TNNCB_HOMAM (Troponin C, isoform 2B OS=Homarus americanus PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22 Identity = 49/125 (39.20%), Postives = 84/125 (67.20%), Query Frame = 2 Query: 17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382 +G IT + +G +LR +G +E LQ++I+E D DG+G ++F EF+ L A+ + + D E EL+EAFRV+D+ NG+I+ L+ ++ L +LT+E++D +I E D DG G +++ EF+++M Sbjct: 24 KGFITPETVGVILRMMGVKISEKNLQEVISETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMQMM 148 The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 420
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bpback to top |