CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MYL4_MOUSE (Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQDMINEVDAD--GTGTIDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            IT  + G VLR+LGQNPT AE+  ++ +   +   + T+DF  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+++ EV++++     D +G INYE FVK +M+
Sbjct:   69 ITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMSSKTLDFEMFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMSEAEVEQLL-SGQEDANGCINYEAFVKHIMS 192          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MYL1_HUMAN (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            F R  +  IT  ++G VLR+LG NPT AE++ ++     +      I+F +FL +M      KD  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV E +     D +G INYE FVK +M+
Sbjct:   62 FDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEV-EALMAGQEDSNGCINYEAFVKHIMS 193          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT +EL   L +LG    + +L  MI ++DA+G G +D  EF +L    +++ + E ++++AF VFD+D +GFI+  EL  VMT+LG K   T E   EMI + D DGDG++NY+EF+++M
Sbjct:   64 DGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKE-EGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMM 186          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKJ_ARATH (Calcium-dependent protein kinase 19 OS=Arabidopsis thaliana GN=CPK19 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G IT  EL + L  LG   TE E++ ++ + D DG GTID+ EF++    + +  + E+ L +AF+ FDKD +GFIS  EL   M   N+G+   D  + E+I E D D DG INY+EF  +M
Sbjct:  418 GTITYDELKSGLEKLGSRLTETEVKQLLEDADVDGNGTIDYIEFISATMNRFR-VEREDNLFKAFQHFDKDNSGFISRQELETAMKEYNMGD---DIMIKEIISEVDADNDGSINYQEFCNMM 536          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MYL4_HUMAN (Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            IT  + G VLR+LGQNPT AE+  ++ +   +      +DF  FL ++    + K+  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+ EV++++   + D +G INYE FVK +M+
Sbjct:   73 ITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHIMS 196          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MYL1_BOVIN (Myosin light chain 1/3, skeletal muscle isoform OS=Bos taurus GN=MYL1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            F R  E  IT  ++G VLR+LG NPT AE++ ++     +      I+F +FL ++      KD  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV E +     D +G INYE FVK +M+
Sbjct:   60 FDRTGECKITLSQVGDVLRALGTNPTNAEVKKVLGNPSNEEMNAKKIEFEQFLPMLQAISNNKDQGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEV-EALMAGQEDSNGCINYEAFVKHIMS 191          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLC1_YEAST (Myosin light chain 1 OS=Saccharomyces cerevisiae GN=MLC1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMIN-EVDADGTGTIDFPEFLNLMARKMKDTDSE-----EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 376
            +G I    LG  LR++G NPT   +QD+IN +       ++   +   L+    K+ D+      E+  +AF+VFDK+  G +S  +LR+++T LGEKLTD EVDE+++  +VD +G+I+Y++F++
Sbjct:   19 QGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 144          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLRH_CAEEL (Probable myosin regulatory light chain OS=Caenorhabditis elegans GN=mlc-4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 47/122 (38.52%), Postives = 76/122 (62.30%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I  ++L  +  SLG+  TE  +  MINE  A G   I+F  FL L   K+  TD EE ++ AF+ FD+D +G ++   LR ++T +GE+ ++E+VDE+ R+A + G GQ +Y EF +++
Sbjct:   44 DGFIDQEDLKDMFASLGKEVTEQFIDSMINE--APGAQPINFTMFLTLFGEKLTGTDPEEVIRNAFQCFDEDNSGKLNEEHLRELLTTMGERYSEEQVDELFRDAPIKG-GQFDYVEFTRML 162          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLR4_SCHPO (Myosin regulatory light chain cdc4 OS=Schizosaccharomyces pombe GN=cdc4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 52/131 (39.69%), Postives = 79/131 (60.31%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARK--MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            F R   G I    +G +LR+ GQNPT AE    I E+++     +D  +FL ++ R          EE  + F+VFDKD  G I   ELR+V+T+LGEKL++EE+DE+++   V  DG +NY +FV++++A
Sbjct:   15 FDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 140          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLEX_CHICK (Myosin light chain, embryonic OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGT--IDFPEFLNLMAR--KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            IT  + G VLR+LG NPT AE+  ++ +   +   T  +DF  FL ++    + ++  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+ EV++++   + D +G INYE FVK +M+
Sbjct:   61 ITYAQCGDVLRALGHNPTNAEVLKVLGKPKPEDLNTKMLDFETFLPILQHFTRNREQGTFEDFVEGLRVFDKEGNGLVMGAELRHVLVTLGEKMTESEVEQLMAGLE-DANGCINYEAFVKHIMS 184          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
MYL4_MOUSE1.799e-1840.80Myosin light chain 4 OS=Mus musculus GN=Myl4 PE=2 ... [more]
MYL1_HUMAN1.799e-1841.35Myosin light chain 1/3, skeletal muscle isoform OS... [more]
CML4_ARATH1.799e-1841.94Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CDPKJ_ARATH2.350e-1841.46Calcium-dependent protein kinase 19 OS=Arabidopsis... [more]
MYL4_HUMAN3.069e-1840.80Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 ... [more]
MYL1_BOVIN3.069e-1841.35Myosin light chain 1/3, skeletal muscle isoform OS... [more]
MLC1_YEAST3.069e-1836.51Myosin light chain 1 OS=Saccharomyces cerevisiae G... [more]
MLRH_CAEEL4.008e-1838.52Probable myosin regulatory light chain OS=Caenorha... [more]
MLR4_SCHPO4.008e-1839.69Myosin regulatory light chain cdc4 OS=Schizosaccha... [more]
MLEX_CHICK4.008e-1840.00Myosin light chain, embryonic OS=Gallus gallus PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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