CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPK2_MAIZE (Calcium-dependent protein kinase 2 OS=Zea mays GN=CPK2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G IT +EL   L  LG   +EAE++ ++   D DG G+ID+ EF+     + K  + +E L +AF+ FDKD +GFI+  EL   +    +G+  T   + E+I E D D DG+INYEEF  +M
Sbjct:  384 GTITYEELKAGLAKLGSKLSEAEVKQLMEAADVDGNGSIDYVEFITATMHRHK-LERDEHLFKAFQYFDKDNSGFITRDELESALIEHEMGDTST---IREIISEVDTDNDGRINYEEFCAMM 502          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLR_DICDI (Myosin regulatory light chain OS=Dictyostelium discoideum GN=mlcR PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            F +   G I    L T  +  G    E +L  M  E D   +G I FPEF+++M+R+MK T +E+ L  AF+ FD + NG+I   +L   +T LG+KLT+ E+ E++  ++ +   Q+ Y+ FV  + +K
Sbjct:   32 FDKDRTGFIKKDALKTTCKQFGVFVMEDQLDAMFAEADTTKSGAIGFPEFMSMMSRRMKQTSNEQILMNAFKTFDPEGNGYILTKDLSKALTTLGDKLTEAELQELLSISE-NEQKQVKYDLFVNTLFSK 160          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML1_ARATH (Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I+  E   VLR+LGQ     ++  +   VD DG G IDF EF++  A K        +++ +F  FD + +G ISA E+  V+  LGE+ + E+ + M+R  D DGDG +N EEF+K+M
Sbjct:   63 DGKISQTEYKVVLRALGQERAIEDVPKIFKAVDLDGDGFIDFREFID--AYKRSGGIRSSDIRNSFWTFDLNGDGKISAEEVMSVLWKLGERCSLEDCNRMVRAVDADGDGLVNMEEFIKMM 182          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKB_ARATH (Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G IT +EL   L+ +G    E+E++ +++  D D +GTID+ EFL      M   + EE L  AF  FDKD +G+I+  EL+   T  G  L D  +D+MI+E D+D DG+I++ EF  +M
Sbjct:  345 GTITFEELKAGLKRVGSELMESEIKSLMDAADIDNSGTIDYGEFL-AATLHMNKMEREEILVAAFSDFDKDGSGYITIDELQSACTEFG--LCDTPLDDMIKEIDLDNDGKIDFSEFTAMM 462          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPK6_ARATH (Calcium-dependent protein kinase 6 OS=Arabidopsis thaliana GN=CPK6 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 47/121 (38.84%), Postives = 71/121 (58.68%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G IT  EL   LR  G    + E++D++   D D +GTID+ EF+      +   + EE L  AF+ FDKD +G+I+  EL+      G  +TD  ++++I+E D D DG+I+YEEFV +M
Sbjct:  404 GAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYSEFIAATIH-LNKLEREEHLVSAFQYFDKDGSGYITIDELQQSCIEHG--MTDVFLEDIIKEVDQDNDGRIDYEEFVAMM 521          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPK2_ORYSJ (Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT--NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G IT +EL   L  LG   +EAE++ ++   D DG G+ID+ EF+     + K  + +E L +AF+ FDKD +GFI+  EL   +    +G+  T   + ++I E D D DG+INYEEF  +M
Sbjct:  403 GTITYEELKAGLAKLGSKLSEAEVKQLMEAADVDGNGSIDYVEFITATMHRHK-LERDEHLFKAFQYFDKDNSGFITRDELESALIEHEMGDTST---IKDIISEVDTDNDGRINYEEFCAMM 521          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: YT67_CAEEL (Uncharacterized calcium-binding protein B0563.7 OS=Caenorhabditis elegans GN=B0563.7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLM--ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I  +EL   + S+G +  +AE+ ++I EVDADG G IDF EF   M  ++ +  + +EE ++E F +FD+D+NG I+  E +++    G+   DE  +++ RE DV  +G ++ ++F  ++
Sbjct:   66 GAIGNEELKQAMISIGLHANKAEIDNVIKEVDADGNGEIDFEEFCACMKKSQNIVKSTNEELIRECFEIFDQDRNGIITENEFKYIAKEFGD-FDDELAEKVFRELDVSANGHLSADQFATIV 187          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: SPE1A_STRPU (Calcium-binding protein SPEC 1A OS=Strongylocentrotus purpuratus GN=SPEC1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            IT +ELG   +S G++ T+ ++  MI++VD D +GTIDF E L  +A +M K T  EE   +AF   DKD NG +S  ELR  ++     +  +++  +I++AD + DG+I+ EEF+K++
Sbjct:   30 ITAEELGEFFKSTGKSYTDKQIDKMISDVDTDESGTIDFSEMLMGIAEQMVKWTWKEEHYTKAFDDMDKDGNGSLSPQELREALSASKPPMKRKKIKAIIQKADANKDGKIDREEFMKLI 149          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKV_ARATH (Calcium-dependent protein kinase 31 OS=Arabidopsis thaliana GN=CPK31 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE-EVDEMIREADVDGDGQINYEEFVKVMMAK*VTPPNQNFL 421
            G IT +EL T L  LG N ++ E++ ++   D DG GTID  EF++    + +  D ++ + +AF+ FDKD +G I+  EL   M   G  + DE  + ++I E D D DG+IN+EEF  +M +     P +  L
Sbjct:  350 GTITLEELKTGLTRLGSNLSKTEVEQLMEAADVDGNGTIDIDEFISATMHRYR-LDRDDHVYQAFQHFDKDNDGHITKEELEMAMKEHG--VGDEVSIKQIITEVDTDNDGKINFEEFRTMMRSGSSLQPQRELL 481          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKR_ARATH (Calcium-dependent protein kinase 27 OS=Arabidopsis thaliana GN=CPK27 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*VTPPNQNFL 421
            G IT +EL T L  LG N ++ E++ ++   D DG GTID  EF++    + K  D +E + +AF+ FDKD +G I+  EL   M   G    +  + ++I +AD D DG+IN+EEF  +M  +    P    L
Sbjct:  350 GNITLEELKTGLTRLGSNLSKTEVEQLMEAADMDGNGTIDIDEFISATMHRYK-LDRDEHVYKAFQHFDKDNDGHITKEELEMAMKEDGAG-DEGSIKQIIADADTDNDGKINFEEFRTMMRTESSLQPEGELL 481          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CDPK2_MAIZE1.289e-1639.84Calcium-dependent protein kinase 2 OS=Zea mays GN=... [more]
MLR_DICDI1.684e-1634.62Myosin regulatory light chain OS=Dictyostelium dis... [more]
CML1_ARATH1.684e-1638.52Calmodulin-like protein 1 OS=Arabidopsis thaliana ... [more]
CDPKB_ARATH1.684e-1639.67Calcium-dependent protein kinase 11 OS=Arabidopsis... [more]
CDPK6_ARATH1.684e-1638.84Calcium-dependent protein kinase 6 OS=Arabidopsis ... [more]
CDPK2_ORYSJ2.199e-1639.02Calcium-dependent protein kinase isoform 2 OS=Oryz... [more]
YT67_CAEEL3.751e-1634.15Uncharacterized calcium-binding protein B0563.7 OS... [more]
SPE1A_STRPU3.751e-1639.17Calcium-binding protein SPEC 1A OS=Strongylocentro... [more]
CDPKV_ARATH3.751e-1636.30Calcium-dependent protein kinase 31 OS=Arabidopsis... [more]
CDPKR_ARATH3.751e-1636.57Calcium-dependent protein kinase 27 OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
back to top