CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9834 contig Csv1_Contig9834:136..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKD_ARATH (Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G ++ +EL   LR       E+E+Q +I  VD  G GT+D+ EF+ +     K   ++E L++AF  FDKD NG+I   EL   +   G     +  +++ +E D D DG+I+YEEF  +M
Sbjct:  372 DGIVSIEELKAGLRDFSTQLAESEVQMLIEAVDTKGKGTLDYGEFVAVSLHLQK-VANDEHLRKAFSYFDKDGNGYILPQELCDALKEDGGDDCVDVANDIFQEVDTDKDGRISYEEFAAMM 492          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB1_RAT (Calcineurin subunit B type 1 OS=Rattus norvegicus GN=Ppp3r1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    +Q +I+  D DG G +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB1_MOUSE (Calcineurin subunit B type 1 OS=Mus musculus GN=Ppp3r1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    +Q +I+  D DG G +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB1_HUMAN (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    +Q +I+  D DG G +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB1_BOVIN (Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    +Q +I+  D DG G +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT---------------------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G IT KELG   ++ G    + EL   ++++DA+G G +D  EF  L    + D                      D +E ++EAF VFD++ +GFI+  ELR V+++LG K   T ++   MI   D DGDG+++++EF ++M
Sbjct:   18 DGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEGMREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 162          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKM-----------KDTDSEEE--LKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F R  +G IT +EL   L  LG      EL  +I  +DA+G G +D  EF  L    M           K+ + EE+  ++EAFRVFD + +G+I+  EL  V+ +LG K   T EE   MI + D DGDG++++ EF+++M
Sbjct:  100 FDRNGDGRITREELEDSLGKLGIPVPADELAAVIARIDANGDGCVDVEEFGELYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMM 241          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKW_ARATH (Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G I   EL   L+ LG    + +LQ +++  D D  G +D  EF+ +    ++   ++E LK+AF  FD++ NG+I   ELR  +++ LG   ++E VD +IR+ D D DG+I+YEEFV +M
Sbjct:  382 GKINIDELKIGLQKLGHAIPQDDLQILMDAGDIDRDGYLDCDEFIAISVH-LRKMGNDEHLKKAFAFFDQNNNGYIEIEELREALSDELGT--SEEVVDAIIRDVDTDKDGRISYEEFVTMM 500          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB_SCHPO (Calcineurin subunit B OS=Schizosaccharomyces pombe GN=cnb1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   59 SLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*VT 400
            S+  NP  + L    + VD DG G +DF EF+N ++      + EE+LK AF+++D D++G+IS  EL  V+     TNL E    + VD+ I E D D DG+I++EEF  ++    VT
Sbjct:   51 SVASNPLASRL---FSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVSGSNVT 166          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CABP3_HUMAN (Calcium-binding protein 3 OS=Homo sapiens GN=CABP3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 39/90 (43.33%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  128 GTIDFPEFLNLMARKMKDTDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            G +DF +F+ LM  K+    +     +E+++AF+ FD + +G I+ AEL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:  101 GRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLAELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 190          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CDPKD_ARATH2.688e-1435.25Calcium-dependent protein kinase 13 OS=Arabidopsis... [more]
CANB1_RAT4.586e-1439.13Calcineurin subunit B type 1 OS=Rattus norvegicus ... [more]
CANB1_MOUSE4.586e-1439.13Calcineurin subunit B type 1 OS=Mus musculus GN=Pp... [more]
CANB1_HUMAN4.586e-1439.13Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
CANB1_BOVIN4.586e-1439.13Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3... [more]
CML28_ORYSJ7.822e-1433.10Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML22_ORYSJ7.822e-1437.32Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CDPKW_ARATH7.822e-1437.70Calcium-dependent protein kinase 32 OS=Arabidopsis... [more]
CANB_SCHPO7.822e-1438.66Calcineurin subunit B OS=Schizosaccharomyces pombe... [more]
CABP3_HUMAN7.822e-1443.33Calcium-binding protein 3 OS=Homo sapiens GN=CABP3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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