CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9834 contig Csv1_Contig9834:136..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML33_ARATH (Probable calcium-binding protein CML33 OS=Arabidopsis thaliana GN=CML33 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT--DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY 361
            +G I+ +E    + +L  +    +L +M  ++D +G G +D  +F + M +  + +  D E+ELK+AF+++D + +G ISA EL  VMT LGEK T E    M++  DVDGDG I +
Sbjct:   18 DGKISWEEFRDAIHALSPSIPSEKLVEMFIQLDTNGDGQVDAAKFASCMDQTAQSSGGDVEKELKDAFKLYDINCDGKISANELHVVMTRLGEKCTVESCVGMVQAIDVDGDGYIRF 134          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMK------------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            F R  +G IT +EL   L  LG      EL   I  +DA+G G +D  EF  L    M+            D D E  ++EAF VFD++ +GFI+  EL  V+ +LG K   T E+   MI + D DGDG++++ EF ++M
Sbjct:   16 FDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDMDEFTQLYETVMRVDGGGGGGGGACDVD-EASMREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMM 155          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPKA_ARATH (Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana GN=CPK10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEV-DEMIREADVDGDGQINYEEFVKVMMA 388
            +G IT  EL   L+ +G    E E++ ++   D DG G +D+ EF+ ++    K  +++E  K AF  FDKD + +I   ELR  + + LGE   D  V  +++RE D D DG+INY+EFV +M A
Sbjct:  381 DGKITYPELKAGLQKVGSQLGEPEIKMLMEVADVDGNGFLDYGEFVAVIIHLQK-IENDELFKLAFMFFDKDGSTYIELDELREALADELGEP--DASVLSDIMREVDTDKDGRINYDEFVTMMKA 503          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLR_SPISA (Myosin regulatory light chain, smooth muscle OS=Spisula sachalinensis PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 40/125 (32.00%), Postives = 70/125 (56.00%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G I   +L  +  +LG  P ++ LQ M+ E        ++F  FL+L + KM  TD EE L+ AF++FD D  G+I    ++ ++ N+G+  + +EV +  +EA + G G+++Y  FV  +  K
Sbjct:   37 DGLIDVSDLKEMYSNLGTAPQDSVLQAMVKEAPQ-----MNFTGFLSLFSEKMSGTDPEETLRNAFQMFDSDNTGYIPEEYMKDLLENMGDNFSKDEVRQTWKEAPIAG-GKVDYNAFVSKIKGK 155          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLE3_MUGCA (Myosin light chain 3, skeletal muscle isoform OS=Mugil capito PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 42/128 (32.81%), Postives = 75/128 (58.59%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGT--IDFPEFLNLMARKMKDTDS-----EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            +   ++  ++R+LGQNPT  ++  ++    AD      ++F  FL ++    K+ D+      ++  E  RVFDK+ NG +  AELR V++ LGEK+T+ E+D ++  A  + +G ++YE FVK +M+
Sbjct:   26 VAFNQVADIMRALGQNPTNKDVTKILGNPSADDMANKRLNFDAFLPML----KEVDALPKGTYDDYVEGLRVFDKEGNGTVMGAELRIVLSTLGEKMTEPEIDALM--AGQEDEGSVHYEAFVKHIMS 147          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB_CRYNE (Calcineurin subunit B OS=Cryptococcus neoformans GN=CNB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:   98 MINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEE----VDEMIREADVDGDGQINYEEFVKVM 382
            MI   D DG+GT+DF EF+  ++        +E+L+ AF+V+D D++G+IS  EL  V+  + G  L D++    VD+ I EAD DGDG++++EEF +++
Sbjct:   61 MIAIFDEDGSGTVDFQEFVGGLSAFSSKGGRDEKLRFAFKVYDMDRDGYISNGELYLVLKQMVGNNLKDQQLQQIVDKTIMEADKDGDGKLSFEEFTQMV 160          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLE_TODPA (Myosin catalytic light chain LC-1, mantle muscle OS=Todarodes pacificus PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMAR-KMKDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV--DGDGQINYEEFVKVMMA 388
            F+   +G +   ++G +LR LG NPTEA++          G       E L +      KDT +  +E  EAF+ FD++  G IS+AE+R+V+  LGE++T+++ +++    D+  D DG I YE+ +K +MA
Sbjct:   21 FWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH-GGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 152          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CDPK8_ARATH (Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 42/124 (33.87%), Postives = 72/124 (58.06%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPT-EAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            G I  +EL   L  LGQ    + +LQ ++   D DG GT+++ EF+ +    +K   ++E L +AF  FD++Q+ +I   ELR  + +  +  ++E V  ++++ D D DG+I+YEEF  +M A
Sbjct:  376 GKINLEELKFGLHKLGQQQIPDTDLQILMEAADVDGDGTLNYGEFVAVSVH-LKKMANDEHLHKAFSFFDQNQSDYIEIEELREALNDEVDTNSEEVVAAIMQDVDTDKDGRISYEEFAAMMKA 498          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARK----MKDTDSEEELKEAFRVFDKDQ-NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I+  EL     S+G+  +    Q+ INEVD D  G++ F +F+ LM R+      + D + ELK AF +F+ ++ +G I+   L+ ++  LGE  T  E + MI+  D+DG+G +++ EF ++M
Sbjct:   77 DGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFEDFVGLMTRRDLYGDGEVDGDGELKTAFEMFEVEKGSGCITPKGLQKMLVKLGESRTYGECEAMIKFYDIDGNGILDFHEFRQMM 203          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB_NEUCR (Calcineurin subunit B OS=Neurospora crassa GN=cnb-1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 2
Query:   44 GTVLR----SLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            GT+ R    SL Q  T      MI   D DG G +DF EF++ ++      + E++L+ AF+V+D D++G+IS  EL  V+     +NL ++   + VD+ I EAD+D DG+I++EEF K++
Sbjct:   39 GTIEREEFLSLPQISTNPLATRMIAIFDEDGGGDVDFQEFVSGLSAFSSKGNKEQKLRFAFKVYDIDRDGYISNGELFIVLKMMVGSNLKDQQLQQIVDKTIMEADLDKDGKISFEEFTKMV 160          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CML33_ARATH1.334e-1336.75Probable calcium-binding protein CML33 OS=Arabidop... [more]
CML17_ORYSJ1.334e-1336.88Probable calcium-binding protein CML17 OS=Oryza sa... [more]
CDPKA_ARATH1.334e-1338.10Calcium-dependent protein kinase 10 OS=Arabidopsis... [more]
MLR_SPISA2.276e-1332.00Myosin regulatory light chain, smooth muscle OS=Sp... [more]
MLE3_MUGCA2.972e-1332.81Myosin light chain 3, skeletal muscle isoform OS=M... [more]
CANB_CRYNE2.972e-1340.00Calcineurin subunit B OS=Cryptococcus neoformans G... [more]
MLE_TODPA3.882e-1333.83Myosin catalytic light chain LC-1, mantle muscle O... [more]
CDPK8_ARATH3.882e-1333.87Calcium-dependent protein kinase 8 OS=Arabidopsis ... [more]
CML41_ARATH6.622e-1333.86Probable calcium-binding protein CML41 OS=Arabidop... [more]
CANB_NEUCR6.622e-1337.70Calcineurin subunit B OS=Neurospora crassa GN=cnb-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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