CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLR_LUMTE (Myosin regulatory light chain, striated muscle, 25 kDa isoform OS=Lumbricus terrestris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 33/122 (27.05%), Postives = 75/122 (61.48%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I   +LG + + +G+      +++M+    A+    ++F  FL L   K+  TD+E  L++AF +FD+D+ G++    ++ ++TN+G++   +E+ ++ +EA ++G G+ +Y +FV+++
Sbjct:   72 DGIIGPDDLGNIFQQIGREVDPKVVKEML----AESAEKLNFTHFLTLFGEKLHGTDTEGTLRDAFALFDEDKLGYLLEEYVKDLLTNVGDQYNKDEIKQVWKEAPIEG-GKFDYVKFVRLI 188          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB_YARLI (Calcineurin subunit B OS=Yarrowia lipolytica GN=CNB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEF 370
            G + T E  + L  +  NP  + L D+ +E   + +G +DF EF+N ++      + +E+L+ AF+V+D D++G+IS  EL  V+      NL +    + VD+ I EAD DGDG+I++EEF
Sbjct:   38 GILETNEFLS-LPGVAANPLASRLMDVFDE---NHSGDVDFQEFINGLSTFSTKGNKKEKLRFAFKVYDIDRDGYISNGELFIVLKMMVGNNLKDAQLQQIVDKTIMEADKDGDGKISFEEF 155          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB2_MOUSE (Calcineurin subunit B type 2 OS=Mus musculus GN=Ppp3r2 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    + D+    D DG G +DF EF+   ++     D E++L+ AFR++D D +GFIS  EL  V+      NL +    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPLVGRVIDIF---DTDGNGEVDFHEFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVLDKDGDGRISFEEFSDVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MYL5_HUMAN (Myosin light chain 5 OS=Homo sapiens GN=MYL5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 40/117 (34.19%), Postives = 67/117 (57.26%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQ-NPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 364
            +G I  ++L     SLG+ N  + EL  M+ E     +G I+F  FLNL   K+  TD+EE +  AF++ D D  G I+   ++ ++ +  +K+T EEVD+M + A +D  G ++Y+
Sbjct:   47 DGFIDKEDLKDTYASLGKTNVKDDELDAMLKEA----SGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYK 159          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB2_RAT (Calcineurin subunit B type 2 OS=Rattus norvegicus GN=Ppp3r2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    + D+    D DG G +DF EF+   ++     D E++L+ AFR++D D +GFIS  EL  V+      NL +    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   46 LPELQQNPLVGRVIDIF---DTDGNGEVDFREFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVLDKDGDGRISFEEFRDVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: SPE2C_STRPU (Calcium-binding protein SPEC 2C OS=Strongylocentrotus purpuratus GN=SPEC2C PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 40/125 (32.00%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 388
            +G IT +EL    +S+    T+ ++ +M++ VD DG+  +DF E L   A +M+   +  +  +AF   D D++G +S  ELR  ++   +  +T EE+D +I++AD + DG+I   EFV+++ +
Sbjct:   27 DGKITPEELKAAFKSIEIELTQEKIDEMMSMVDKDGSRPVDFSEILMKKAEQMRGKGA--QYFKAFDALDTDKSGSLSPEELRTALSACTDPPMTKEEIDAIIKKADGNNDGEIRRAEFVRMIQS 149          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLR_TODPA (Myosin regulatory light chain LC-2, mantle muscle OS=Todarodes pacificus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 379
            +G I  ++L  +  SLG+ P + EL  M+ E      G ++F  FL L   K+  TD E+ L+ AF +FD+D  GFI    L+ ++ N+G+  + EE+  + ++A +  + Q NY + V +
Sbjct:   30 DGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDI 145          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: LPS1A_LYTPI (Calcium-binding protein LPS1-alpha OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDT-DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            +G ++  EL  ++     N TE   Q++I  +D +  G + F EF+  M    K+   S +E+K+ F   DKD NG IS  EL   +  +  K+ D   +++I+EAD DGDG +N EEF   ++ K
Sbjct:   33 DGTVSCAELVKLM-----NWTEEMAQNIIARLDVNSDGHMQFDEFILYMEGSTKERLYSSDEIKQMFDDLDKDGNGRISPDELNKGVREIYTKVVDGMANKLIQEADKDGDGHVNMEEFFDTLVVK 153          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB_CANGA (Calcineurin subunit B OS=Candida glabrata GN=CNB1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 2
Query:    8 RPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEF 370
            R   G I   E  ++   +  NP    + ++    DAD +G +DF EF+  ++        +E+LK AF+++D D++G IS  EL  V+     +NL +K   + VD  I E D+DGDGQ+++EEF
Sbjct:   35 RDSSGSIDKNEFMSI-PGVSANPLAGRIMEVF---DADNSGDVDFQEFITGLSIFSGRGSKDEKLKFAFKIYDIDKDGLISNGELFIVLKIMVGSNLDDKQLQQIVDRTIMENDLDGDGQLSFEEF 156          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB2_DROME (Calcineurin subunit B type 2 OS=Drosophila melanogaster GN=CanB2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L QNP    +Q +I+  DADG G +DF EF+  +++     D   +L+ AFR++D D +G+IS  EL  V+      NL +    + VD+ I  AD D DG+I+++EF  V+
Sbjct:   46 LPELQQNPL---VQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYDMDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISFDEFCSVV 157          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
MLR_LUMTE3.286e-1227.05Myosin regulatory light chain, striated muscle, 25... [more]
CANB_YARLI3.286e-1236.07Calcineurin subunit B OS=Yarrowia lipolytica GN=CN... [more]
CANB2_MOUSE3.286e-1238.26Calcineurin subunit B type 2 OS=Mus musculus GN=Pp... [more]
MYL5_HUMAN4.292e-1234.19Myosin light chain 5 OS=Homo sapiens GN=MYL5 PE=2 ... [more]
CANB2_RAT4.292e-1238.26Calcineurin subunit B type 2 OS=Rattus norvegicus ... [more]
SPE2C_STRPU5.606e-1232.00Calcium-binding protein SPEC 2C OS=Strongylocentro... [more]
MLR_TODPA5.606e-1232.23Myosin regulatory light chain LC-2, mantle muscle ... [more]
LPS1A_LYTPI7.321e-1234.13Calcium-binding protein LPS1-alpha OS=Lytechinus p... [more]
CANB_CANGA7.321e-1234.13Calcineurin subunit B OS=Candida glabrata GN=CNB1 ... [more]
CANB2_DROME7.321e-1237.39Calcineurin subunit B type 2 OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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