CF835306

Overview
NameCF835306
Unique NameCF835306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CETNB_DICDI (Centrin-B OS=Dictyostelium discoideum GN=cenB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 2
Query:   20 GCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 391
            G +   ++    ++LG   TE  L+     +   G  +I F  F  L++  +   DS   L++AF++F KD +G I+  +L+ V  N+GE+ +D ++ +MI  AD DGDG IN  EF+ +M  K
Sbjct:   29 GKLDNDQIKYAFKALGCEITEETLE----LIKKKGQKSISFNSFFELVSPYIPKRDSMSTLEQAFKLFVKDGSG-ITFKDLKKVAINIGEECSDSDLYDMIEFADTDGDGVINKSEFISLMTTK 147          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB1_NAEGR (Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 41/122 (33.61%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   32 TKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +K+   ++  L  NP    ++ +I+  D +G G+++F EF+  ++      D + +L+ AF+V+D D +G+IS  EL  V+      NL +    + VD+ I EAD DGDG+I++EEF K +
Sbjct:   46 SKDEFLMIPELAVNPL---VKRVISIFDENGDGSVNFKEFIAALSVFNAQGDKQRKLEFAFKVYDIDGDGYISNGELFTVLKMMVGNNLSDVQLQQIVDKTILEADEDGDGKISFEEFAKTL 164          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLRV_RAT (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Rattus norvegicus GN=Myl2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQ-NPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I   +L     +LG+ N    E+ +MI E      G I+F  FL +   K+K  D EE +  AF+VFD +  G + A  +R ++T   E+ + EE+D+M      D  G ++Y+  V ++
Sbjct:   41 DGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAP----GPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREMLTTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHII 159          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLRV_MOUSE (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Mus musculus GN=Myl2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQ-NPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I   +L     +LG+ N    E+ +MI E      G I+F  FL +   K+K  D EE +  AF+VFD +  G + A  +R ++T   E+ + EE+D+M      D  G ++Y+  V ++
Sbjct:   41 DGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAP----GPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREMLTTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHII 159          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: EFCB7_HUMAN (EF-hand calcium-binding domain-containing protein 7 OS=Homo sapiens GN=EFCAB7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385
            F   LE  I+  +L   L+  G+NP+    Q  IN+     T  ++F +F  ++ RK K T S+ EL ++F+  D + +G I   +L   +T  GEK+T EEV+ +I  ADV+ DG+ +Y +F K+ M
Sbjct:   47 FKSSLENIISKDQLYLALQHAGRNPS----QKTINKYWTPQTAKLNFDDFC-IILRKEKPT-SKAELLKSFKQLDVNDDGCILHTDLYKFLTKRGEKMTREEVNAIINLADVNADGKFDYIKFCKLYM 168          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: EFH52_TRYCR (EF-hand protein 5 variant 2 OS=Trypanosoma cruzi PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 37/126 (29.37%), Postives = 74/126 (58.73%), Query Frame = 2
Query:   26 ITTKELGTVLRSLGQNPTEAELQD---MINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKVMMAK 391
            I +K++  +++++G + TE E  D   +I + +      + F +FL LM R++ DT ++E L+ AF  +DK + G+++  +   +   L E+ T EE++E++  A+VD  D +I+Y  FV  + ++
Sbjct:   80 IPSKDVYALMQNVGMHLTEEEFHDALRVIGQSEPQNADELSFSDFLLLMTREVDDTMADE-LRSAFFHYDKHKTGYVTRKQFTELFATLAERSTPEELEELLAVAEVDETDDKIDYNRFVNELTSR 204          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQNP-TEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385
            +G ++  +L  ++  L   P ++ E+  M+ EVD    G I   +  + +A    +   E EEL+E F +FD D+NG ISA EL  V   +G E+ T EE   MI   D +GDG + +++F ++M+
Sbjct:   83 DGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLASRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIATVDGNGDGFVCFDDFCRMMV 208          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CANB2_HUMAN (Calcineurin subunit B type 2 OS=Homo sapiens GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   53 LRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTD----EEVDEMIREADVDGDGQINYEEFVKVM 382
            L  L  NP    ++ +I+  D DG G +DF EF+   ++     D E++L+ AF ++D D++G+IS  EL  V+  + G  LTD    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   46 LPELRHNPL---VRRVIDVFDTDGDGEVDFKEFILGTSQFSVKGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMVGNNLTDWQLQQLVDKTIIILDKDGDGKISFEEFSAVV 157          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: MLRV_RABIT (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Oryctolagus cuniculus GN=MYL2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 37/123 (30.08%), Postives = 63/123 (51.22%), Query Frame = 2
Query:   17 EGCITTKELGTVLRSLGQ-NPTEAELQDMINEVDADGTGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 382
            +G I   +L     +LG+ N    E+ +MI E      G I+F  FL +   K+K  D EE +  AF+VFD +  G + A  +R ++T   E+ + +E+D+M      D  G ++Y+  V ++
Sbjct:   41 DGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAP----GPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQAERFSKDEIDQMFAAFPPDVTGNLDYKNLVHII 159          
BLAST of CF835306 vs. ExPASy Swiss-Prot
Match: CML27_ORYSJ (Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 2
Query:    2 FYRPLEGCITTKELGTVLRSLGQNPTEAELQDMINEVDADGTGTIDFPEFLNLMAR---------------KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 385
            F R  +G IT  E+ + L +LG     A L+  +      G   + F +F  L                  K  + D E ++KEAFRVFD+D +GFISAAEL+ V+  LG  E      V EMI   D D DG++++ EF K MM
Sbjct:   39 FDRNGDGEITLDEMASALDALGLGADRAGLEATVGGYIPAGAAGLRFGDFEALHRALGDALFGPVEEEEPGKQGEDDDEGDMKEAFRVFDEDGDGFISAAELQAVLKKLGLPEARNLATVQEMICNVDRDCDGRVDFGEF-KCMM 182          
The following BLAST results are available for this feature:
BLAST of CF835306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
CETNB_DICDI2.782e-1133.06Centrin-B OS=Dictyostelium discoideum GN=cenB PE=3... [more]
CANB1_NAEGR2.782e-1133.61Calcineurin subunit B OS=Naegleria gruberi GN=CNB1... [more]
MLRV_RAT3.633e-1130.89Myosin regulatory light chain 2, ventricular/cardi... [more]
MLRV_MOUSE3.633e-1130.89Myosin regulatory light chain 2, ventricular/cardi... [more]
EFCB7_HUMAN3.633e-1135.16EF-hand calcium-binding domain-containing protein ... [more]
EFH52_TRYCR4.745e-1129.37EF-hand protein 5 variant 2 OS=Trypanosoma cruzi P... [more]
CML35_ARATH4.745e-1133.33Probable calcium-binding protein CML35 OS=Arabidop... [more]
CANB2_HUMAN4.745e-1137.39Calcineurin subunit B type 2 OS=Homo sapiens GN=PP... [more]
MLRV_RABIT6.198e-1130.08Myosin regulatory light chain 2, ventricular/cardi... [more]
CML27_ORYSJ6.198e-1135.86Probable calcium-binding protein CML27 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835306 ID=CF835306; Name=CF835306; organism=Citrus sinensis; type=EST; length=686bp
GTTCTATAGGCCTTTAGAAGGTTGCATTACCACCAAGGAGCTTGGCACTG
TCCTGAGGTCACTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATG
ATCAATGAAGTGGATGCTGATGGTACTGGAACTATTGATTTTCCTGAATT
CCTAAACCTCATGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGC
TGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCA
GCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGGGAGAAGCTTACTGA
TGAGGAAGTCGATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCC
AGATAAATTACGAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACT
CCACCCAACCAAAACTTCCTGGGAAAAGAAGAAATTGGTTGATTAATATA
ATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAG
GTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACT
GGAGCAACTTTTCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGT
GAACATTGTTTCTGTTAAATGAGTGACTCGTTGATCTGCCCTATTTCTTA
TTTCGAGATTTTGTGGATAAGAAATTGATATGTGAT
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