CF835324
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.101e-30 Identity = 89/230 (38.70%), Postives = 121/230 (52.61%), Query Frame = 1 Query: 229 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 G +SV+ S + P+R ++ F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG +L + ++ ++I +G EG R A P TDPI YPGG FDPLG + P+ +++ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGL-ADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.101e-30 Identity = 79/193 (40.93%), Postives = 106/193 (54.92%), Query Frame = 1 Query: 301 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 PP +L G PGD+G+D GL +DPET N + E++H WAMLGA G PELL++ G+ W+ AG L+Y + + + ++ I WA ++ G V I TD YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 190
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.101e-30 Identity = 80/205 (39.02%), Postives = 105/205 (51.22%), Query Frame = 1 Query: 268 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P+RP + P +L G PGD+G+D + +DPET N + E++HCRWAMLGA G PELL K G+ W+ AG + + L + I WA ++ G + + G D PGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPLGL-ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.101e-30 Identity = 78/193 (40.41%), Postives = 106/193 (54.92%), Query Frame = 1 Query: 301 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + + ++ I WA ++ G V I D YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL H+ADP Sbjct: 62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 246
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30 Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 1 Query: 286 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 F G TP +L+G GD+G+D GL SDPET N + E++H RWAMLGA G PELL K G+ W+ AG L+Y + + + ++ I WA ++ G V + TD YPGG FDPLG + P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGS-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30 Identity = 93/236 (39.41%), Postives = 119/236 (50.42%), Query Frame = 1 Query: 226 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPG 858 AGT+ + A + P+R W P ST P +L G PGD+G+D GL +DPET + + E++H RWA+LGA GI PELL T G+ P W+ AG L+Y + V+++ +G EG R VN P G D YPG FDPLG + P+ EL+ KEIKNGRLAM + G + Q I TG GPI NL HLADPG Sbjct: 22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPG 241
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30 Identity = 78/192 (40.62%), Postives = 103/192 (53.65%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA ++ G V + D YPGG FDPLG PE EL+ K IKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.663e-30 Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL + G+ W+ AG L+Y + + + ++ I WA ++ G V + D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.484e-29 Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D L +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA ++ G V + D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.484e-29 Identity = 83/206 (40.29%), Postives = 110/206 (53.40%), Query Frame = 1 Query: 268 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P+RP + P S P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL K G+ W+ AG L+Y + + ++ I WA ++ G V + G D YPGG FDPLG + P+ EL+ KE+KNGRLAM ++ G + Q I TG GPI NL H+ADP Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAI-WA-----TQVVLMGFVEGYRVGGGPLGEGLDPLYPGGA-FDPLGL-ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249 The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bpback to top |