CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 66/181 (36.46%), Postives = 107/181 (59.12%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYS-SSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMR-------GEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R +I+IK+I+N T+RQVTF KRR G+ KKA ELSVLCDA+VALI+FS+ G+L+EYS ++++K  +++++           P     L+E N      +E+A+  H ++ ++       G+ +  LSL+EL++LE  LE G+ ++            N + +R   L  +N  LR ++AE
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAP-----LIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAE 176          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 65/178 (36.52%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL-------RQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQV 712
            M R ++++K+I+N   RQVTFSKRR G+ KKA ELSVLCDA+VALIIFS+ GKL+E+ S+ + + LEK+     N +  +        L    +   ++E +     L       R M GE++  LS++ELQ+LE+ LE  L +             ++L+R+ + L E N++L+ ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSN------SALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 64/183 (34.97%), Postives = 109/183 (59.56%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHR----VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            M R KI+IK+I+N+T RQVTFSKRR G+ KKA EL+VLCDA V ++IFS+TGK+FEY S   S++E++E+++     H + +    Q  +E+  ++N        E  +    +R+  G+++  L+L+++  LE+ LE  + +V            + L+R+ ++L ++N  L + + E   A
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMTRMKN--------EMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQA 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 66/177 (37.29%), Postives = 103/177 (58.19%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHS---KNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+V LI+FS  GKLFEY++ S M+ +LE++  +S   + L   D  S     LE+        E  +++   +   GE++  L+++ELQ LE  L+  L  +            + LQ++ + L E+N +L ++V E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARL-EVLQRNQ--KHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 66/175 (37.71%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R KI+IKKI+N TARQVTFSKRR G+ KK  ELS+LCDA + LI+FSATGKL E+ S  + M ++++++ +H+  L   D    + QL  ++   +L +E       LR   G ++  +   EL  LER LE  + +V              L R+ ++L E+N  + + + E
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRY-LHTNGLRLPDHHDDQEQL--HHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHE 172          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 65/179 (36.31%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHR----VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R KI+IK+I+NAT RQVTFSKRR G+ KKA EL+VLCDA V ++IFS+TGK+FEY S   S++E++E ++     H + +    Q  VE+  + N        E  +    +R+  G+++  L+L ++  LE+ LE  + +V            + L+R+  +L ++N  L + + E
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRN--------EMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 171          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 73/184 (39.67%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHR------VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            M R ++++K I+N   RQVTF+KRR+ + KKA ELSVLCDA+VALIIFS  GKL+E+ SS+SM + LEK++        S  + R  Q S +  L   N       EA ++S   R + GE++  L  +EL++LER L+  L ++             +LQRR ++L E N+ L+++  E S A
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRV-----EALQRSQ--RNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQA 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 67/179 (37.43%), Postives = 112/179 (62.57%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHS-KNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMR---GEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+V+LI+FS  GKL+E+ S+S+M + LE+++  S  ++E  ++P+ EL+    N+Y    K      +L RQ R   GE++  L+ +EL++LER L+  L +V            ++LQ +  +L++ N  L  ++ ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELE----NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDM 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 67/172 (38.95%), Postives = 103/172 (59.88%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHRVHSKNL---ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERL 700
            M R KI+IK+I+N+T RQVTFSKRR GI KKA E+SVLCDA+V ++IFS+ GKL++Y S  +S+  ILEK++ +S  +   E+    S E+  ++  N +M  +        LR ++GE+++ L  +EL  +E +L+ G+  V                R  K+L +EN+ L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIE--------LRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWERHV----RTDKMLEDENKLL 160          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVE-LQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+++K+I+N   RQVTFSKR+ G+ KKA ELSVLCDA+V+LIIFS  GKL+E+S+  +   +E++     NL  +D  ++E  Q L      +  K E+  ++H  R + GE++ G+S++ELQ LER LE  L                EL+R+ + L + N +L+ +  +
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNL--LDNDTLEDTQGLRQEVTKLKCKYESLLRTH--RNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETED 171          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MAD13_ORYSJ9.314e-2436.46MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD17_ORYSJ1.216e-2336.52MADS-box transcription factor 17 OS=Oryza sativa s... [more]
M17_MAIZE1.216e-2334.97MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL8_SOLTU1.216e-2337.29Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
TT16_ARATH1.589e-2337.71Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD29_ORYSJ1.589e-2336.31MADS-box transcription factor 29 OS=Oryza sativa s... [more]
AGL9_ARADE1.589e-2339.67Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP2_ARATH2.075e-2337.43Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS2_ORYSJ3.539e-2338.95MADS-box transcription factor 2 OS=Oryza sativa su... [more]
AGL13_ARATH4.622e-2338.29Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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