CF835339

Overview
NameCF835339
Unique NameCF835339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_TROWT (Glycine dehydrogenase [decarboxylating] OS=Tropheryma whipplei (strain Twist) GN=gcvP PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.442e-26
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2 
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 346
            +DY FH PTMS+PVPGTLM+EPTESE   E+ R+   + SIR EI ++ +   D  NN LK APH    +  D W +PYSR       S     K+WPA+ R+DN YGDRN+ CT
Sbjct:  852 IDYGFHAPTMSFPVPGTLMVEPTESEPFSEIQRFIKTIRSIRAEIDRVIDKTYDPDNNPLKRAPHTLEQIASDKWDRPYSRRTGIVYTS----GKYWPASARIDNAYGDRNIFCT 962
[Close]
BLAST of CF835339 vs. ExPASy Swiss-Prot
Match: GCSP_TROW8 (Glycine dehydrogenase [decarboxylating] OS=Tropheryma whipplei (strain TW08/27) GN=gcvP PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.442e-26
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2 
Query:    2 MDYAFHGPTMSWPVPGTLMIEPTESESKEELDRYCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 346
            +DY FH PTMS+PVPGTLM+EPTESE   E+ R+   + SIR EI ++ +   D  NN LK APH    +  D W +PYSR       S     K+WPA+ R+DN YGDRN+ CT
Sbjct:  852 IDYGFHAPTMSFPVPGTLMVEPTESEPFSEIQRFIKTIRSIRAEIDRVIDKTYDPDNNPLKRAPHTLEQIASDKWDRPYSRRTGIVYTS----GKYWPASARIDNAYGDRNIFCT 962
The following BLAST results are available for this feature:
BLAST of CF835339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
GCSP_TROWT1.442e-2649.57Glycine dehydrogenase [decarboxylating] OS=Tropher... [more]
GCSP_TROW81.442e-2649.57Glycine dehydrogenase [decarboxylating] OS=Tropher... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835339 ID=CF835339; Name=CF835339; organism=Citrus sinensis; type=EST; length=614bp
TATGGATTATGCATTCCATGGACCAACAATGTCATGGCCTGTTCCAGGCA
CACTTATGATTGAACCAACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGG
TATTGTGATGCTCTCATCTCCATCAGAGAAGAAATTGCACAGATTGAAAA
TGGGAAGGCAGATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCAC
CATCTTTGCTCATGGGAGATACATGGACTAAACCATACTCTCGAGAATAT
GCAGCCTATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTAC
AGGACGCGTTGACAATGTGTATGGTGACCGCAACCTCATCTGCACCCTTC
TTCCAGCTGCACAAGTTGCTGAGGAGCAGGCTGCAGCCACTGCTTAGAGT
TGCCATCAACATGCCCCCTGGTGCAAGGTTTCTTCAGGAGCATGGAAAAA
TTTGGAATCATCAGCACTTCCTGATTTGATTGTATATATGAATACAGAGC
CTCATGGCCCAATGCTTCCCTTTGATATACTGATTAATTATATCAGCTTC
TTTAATAACAATAGTTGCTGATTGCAACTCAGGTACTGCAAATTATCATC
CCCCTTTCTTCTCT
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