CF835380

Overview
NameCF835380
Unique NameCF835380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   ++LCM+V  P  A+A+TCGQV+ +LAPC+ +L + GP+   CC GV+ L   A+TT DRQ AC CLK AA S   L+L  AA LP  C V+IPYKIS S DC KV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.496e-25
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  228 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 566
            +LKL   +VLC+LV  PL+  AI+  QV  SL PC+G++R     P P   C G+RSL +AAR   DRQ AC C+K  A  I  +N   AAGLPG C V IPYKIS S DC +V+
Sbjct:    6 SLKLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.496e-25
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = -2
Query:  231 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 500
            +TCGQV G+LA CIGFL+ GG +P  CC GV+++  ++RTT DR+  C+CLK AA ++  +N NNA  LPG CGV+IPYKISTS +C  +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.700e-25
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  231 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 569
            A + L++A ++ ML   P +A A+ CGQV   + PC+ +++ GGP P   CCNGVR L+  A+++ DRQT CNCLK  AR I +LNLNNAA +P  C V++PY IS   DC ++
Sbjct:    4 AQVLLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.401e-23
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = -2
Query:  231 SQMAALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 578
            ++ AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC CLK  A SI  +N+   +G+PG CGVS+P+ IS S DC KV
Sbjct:    2 ARAAATQLVLVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.829e-23
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  231 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 500
            ++CG V+  +A CI +LR  GP+P  CCNGV++L  +A TT DR+TAC CL  A+++I  +N   AAGLP  CGVSIPYKIS S +C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  228 SQMAALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 578
            ++ AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DC K+R
Sbjct:    2 ARAAATQLVLVAMVAAMLIVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -2
Query:  228 SQMAALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 578
            ++ AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DC K+R
Sbjct:    2 ARAAATQLVLVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  228 SQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 578
            SQ+  + LV+A++L        +  AI+CGQVS +L+PCI + R +G   P  CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DC K+R
Sbjct:    7 SQLVLVALVAAMLLVA------ADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 51/93 (54.84%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  231 AITCGQVSGSLAPCIGFLRSGGPIPMPCC-NGVRSLNAAARTTPDRQTACNC-LKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 503
            AI+CGQVS ++ PC+ + R  G  P   C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A+ +PG CGV +PY IS S DC +V
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
The following BLAST results are available for this feature:
BLAST of CF835380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_SOLCI8.773e-2652.25Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP6_GOSHI1.496e-2550.43Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_PHAAU1.496e-2555.56Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_HORVU9.700e-2547.37Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP3_HORVU1.401e-2347.46Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP3_VITSX1.829e-2353.33Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLT42_HORVU9.079e-2347.90Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT43_HORVU1.549e-2247.90Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT41_HORVU1.549e-2246.61Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP_ELECO2.023e-2254.84Non-specific lipid-transfer protein OS=Eleusine co... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835380 ID=CF835380; Name=CF835380; organism=Citrus sinensis; type=EST; length=594bp
TGAACAAAAGGCACCTTTTAAGGTAATAAAAAGAATAGACACAAACTGAC
GATGCCTTGAAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCG
AACGAGACTCGCAGTACAAAGTGTACAGAGAGACTCATAAATCGGACACA
AAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTG
AAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTATAGCAGTCAGCGG
AGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCA
GCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAA
GCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGA
GAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTC
AAGAAACCGATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTAT
GGCCTGAGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTG
AAACAAGCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTT
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