CF835381

Overview
NameCF835381
Unique NameCF835381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.141e-29
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 3
Query:   33 LKLVSALLLCMLVTGPLSAQAI-TCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            +KL   +L CM+V GP++A A+ +CG V+G+L  CI +L  G P+   CCNGV +L   A TTPDRQ AC CL+ AA+++ P LN   AAGLP AC V+IPYKIS ST+C+ VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   21 QMAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            ++A    V A    +++    S  A+TCGQVS ++ PC+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN+  AA +P  CGVSIPY ISTSTDCS+V
Sbjct:    6 KLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.714e-28
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   ++LCM+V  P  A+A++CGQV   L PC+ +L+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  +++  AAGLPGACGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 67/117 (57.26%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   24 MAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNA--AGLPGACGVSIPYKISTSTDCSKVR 368
            MA    V  LLL   + G  +A AITCGQV   L  C+G+ R GG IP  CC GVR+LN  A+TTPDRQTACNCLK      PSL LN A  AG+PG CGV+IPY I   TDC+KVR
Sbjct:    1 MARSSAVCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 3
Query:   39 LVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            + +A++  +L+    S  AI+CGQV+ ++ PCI + R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NAA +P  CGVSIPY ISTSTDCS+V
Sbjct:   10 VATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 3
Query:   48 ALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            AL++CM+V  P++  A++CG V+G L PCI +L  G      CC GV+ L AAA TT DRQ ACNCLK AA +I +LN  NAA LPG C V+IPYKIST+T+C+ ++
Sbjct:   11 ALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 3
Query:   30 ALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            AL+  +  +L + +   + A AITCG V+ SL PC+G+L  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA+ + PSL    A+GLPG CGVSIPY ISTST+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPSL----ASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   30 ALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A+ +V+A+++ +  T   S  AI+CGQVS ++  C+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN  NAA +P  CGVS+PY ISTSTDCS+V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   +LLCM+V  P  A+A+TCGQV+  L PC+ +L+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 3
Query:   24 MAALKL--VSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            MA+L++  + AL+  ++++ P++  AI+CG VSG+L PC+ +L+ GGP P P CC GV+ LN AARTT DR+ ACNCLK +A SI  L   N A LPG CGV +PY ISTST+C+ +R
Sbjct:    1 MASLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
The following BLAST results are available for this feature:
BLAST of CF835381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_ARATH7.141e-2953.51Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP2_SORBI1.591e-2853.45Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP2_TOBAC2.714e-2853.15Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
SCA_LILLO3.544e-2857.26Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_MAIZE4.629e-2854.55Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_LENCU4.629e-2854.21Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP4_ARATH6.045e-2852.63Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI6.045e-2854.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_SOLLC6.045e-2853.15Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_LENCU6.045e-2852.54Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835381 ID=CF835381; Name=CF835381; organism=Citrus sinensis; type=EST; length=623bp
GAAAATCTCAGCAGTAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGCTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGCCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
ACAACTTAAAAAAAAAAAAAAAA
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