CF835385
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 320.087 bits (819), Expect = 7.859e-87 Identity = 150/178 (84.27%), Postives = 161/178 (90.45%), Query Frame = 2 Query: 137 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 670 NGGR+SMR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE D LYPGG+FDPLGLA+DPEAF Sbjct: 30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 2.003e-82 Identity = 160/215 (74.42%), Postives = 171/215 (79.53%), Query Frame = 2 Query: 92 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 + K L P + L +M K +KS S S RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAELKVKE+KNG LAMFSMFGFF Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFF 231
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 4.463e-82 Identity = 148/197 (75.13%), Postives = 166/197 (84.26%), Query Frame = 2 Query: 158 RKTGSKSV---SSGSPWYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 +KT +K+ SSG +YGP+R K+LGP S P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A A QV+LMG +EGYR+ GGP GE DPLYPG SFDPLGLADDP+ FAELKVKEIKNG LA FSMFGFF Sbjct: 20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFF 216
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 1.099e-80 Identity = 145/186 (77.96%), Postives = 158/186 (84.95%), Query Frame = 2 Query: 182 SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 S+G WYGPDR K+LGP S P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+ GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A A QVVLMG +EGYR+ GGP GE DPLYPG SFDPLGLADDP+ FAELKVKEIKNG LAMFS FGFF Sbjct: 34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFF 219
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 2.145e-76 Identity = 149/219 (68.04%), Postives = 167/219 (76.26%), Query Frame = 2 Query: 89 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 F+G+ N P + ++ G ++ S WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVLMG VEG+RI G P +GE D LYPGG FDPLGLADDP FAELKVKEIKNG LAMFSMFGFF Sbjct: 19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 3.659e-76 Identity = 150/218 (68.81%), Postives = 168/218 (77.06%), Query Frame = 2 Query: 95 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 G+A + +P + + GRI+M WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+LMG VEG+RI G +GE D LYPGG FDPLGLADDP FAELKVKEIKNG LAMFSMFGFF Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 231
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.919e-70 Identity = 132/184 (71.74%), Postives = 150/184 (81.52%), Query Frame = 2 Query: 197 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 +YGPDR K+LGP S + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A A QVVLMG E YR GG G + D LYPGG FDPLGLADDP+ FAELKVKEIKNG LAMFS GFF Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFF 216
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.808e-68 Identity = 133/194 (68.56%), Postives = 151/194 (77.84%), Query Frame = 2 Query: 161 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 K SKS SS + +YGPD L + P TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A A QVVLMG VEGYR+ GGP GE DPLYPG +FDPLGLADDP+ FAELKVKEIKNG LAMF+ GFF Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFF 237
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.496e-53 Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 2 Query: 398 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE DPLYPG +FDPLGLADDPEA AELKVKEIKNG LAMFSMFGFF Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFF 113
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.552e-42 Identity = 105/197 (53.30%), Postives = 121/197 (61.42%), Query Frame = 2 Query: 170 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736 SK+VS S WYGPDR +L G L E P YL GE GDYG+D GL PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G I +LA+ A +VVL+G E YRI G + D L+PGG FDPLGLA DPE A LKVKEIKNG LAMF+M GFF Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240 The following BLAST results are available for this feature:
BLAST of CF835385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835385 ID=CF835385; Name=CF835385; organism=Citrus sinensis; type=EST; length=737bpback to top |