CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: OPA1_ONCMA (Dynamin-like 120 kDa protein, mitochondrial OS=Oncorhynchus masou GN=opa1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 2
Query:  284 LESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRK----KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LE +      PRGSG ++TR P+ + L  +EG    A F  + R+    K  D AA+R EI     +   + + +S   I LS+  P +  + L+DLPG+      G      E I ++ ++Y++ P+ IIL I   + D A +D  +  +   P+GERT  VLTK+D
Sbjct:  317 LEMIAQARIFPRGSGEMMTRSPVKVTL--SEGPHHVAMFKDSSREFDLGKEEDLAALRHEIELRMRKSVKEGQTVSPETISLSVKGPGIQRMVLVDLPGVISTVTAGMAADTKETIFSISKNYMQNPNAIILCIQDGSVD-AEADRHRPGQSNGPAGERTIFVLTKVD 481          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 51/167 (30.54%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  284 LESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRK-KFTDFAAVRKEISDETDR-ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPSGERTFGVLTKLD 772
            L S++G   LP G    TR P++++L +    +  A  L    K +    +A+R  + D   +  +GK++   N+ ++ S   P    L L+DLPGL +  V+          E+M+  Y +    I+L I PA+Q  +I++S A+K+A+E DP   RT G++ K+D
Sbjct:   55 LNSLIGHPVLPTGENGATRAPIIIELSRESSLSSKAIILQIDNKSQQVSASALRHSLQDRLSKGASGKNRDEINLKLRTSTAPP----LKLVDLPGLDQRIVD----------ESMIAEYAQHNDAILLVIVPASQASEISSSRALKIAKEYDPESTRTIGIIGKID 207          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 50/167 (29.94%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  284 LESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRK-KFTDFAAVRKEISDETDR-ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPSGERTFGVLTKLD 772
            L S++G   LP G    TR P+++ L + E  +  A  L    K +    +A+R  + D   +  +G+ +    + ++ S   P    L LIDLPGL         + IV+D  +M+  + +    I+L + PA+Q  +I++S A+K+A+E DP   RT G+++K+D
Sbjct:   55 LNSLIGHPVLPTGENGATRAPIIIDLSREESLSSKAIILQIDNKNQQVSASALRHSLQDRLSKGASGRGRDEIYLKLRTSTAPP----LKLIDLPGLD--------QRIVDD--SMIGEHAQHNDAILLVVVPASQASEISSSRALKIAKEYDPESTRTVGIISKID 207          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
OPA1_ONCMA2.520e-1432.74Dynamin-like 120 kDa protein, mitochondrial OS=Onc... [more]
DRP2A_ARATH7.333e-1430.54Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
DRP2B_ARATH4.024e-1229.94Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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