CF835430

Overview
NameCF835430
Unique NameCF835430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO2_YEAST (Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=SOR2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 49/152 (32.24%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  181 DYRLSVAKKLGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 618
            D +L  AK  GA N    S       QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  205 DNKLQRAKDFGATNTFNSSQFSTDKAQDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: DHSO1_YEAST (Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SOR1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 49/152 (32.24%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  181 DYRLSVAKKLGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS-ARGGTAIKVM 618
            D +L  AK  GA N    S       QD+A+ V+K+    G   DV F+C+G +  +  A+  T+ GG +  VGMG      P+   + +E+ ++G FRY    +   +  + +GK++VKPLITH+F F  ++  +A++ + A GG  +K +
Sbjct:  205 DNKLQRAKDFGATNTFNSSQFSTDKAQDLADGVQKLLG--GNHADVVFECSGADVCIDAAVKTTKVGGTMVQVGMGKNYTNFPIAEVSGKEMKLIGCFRYSFGDYRDAVNLVATGKVNVKPLITHKFKF--EDAAKAYDYNIAHGGEVVKTI 352          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: XYL2_YEAST (D-xylulose reductase OS=Saccharomyces cerevisiae GN=XYL2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  208 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA 612
            +L  A++ GA +IV  S +L         I+KA+G  G DV F+C+G    +   +   +AGG +  VGMG  E+  P++    +E+   G FRY +  +   +E + S K+ +KP ITHR+ F  K+  EAFE ++
Sbjct:  208 KLETARQFGATHIVN-SGDLPHGVTVDSVIKKAIGKKGADVVFECSGAEPCVRAGIEVCKAGGTIVQVGMGQEEIQFPISIIPTKELTFQGCFRYCQGDYSDSIELVSSRKLSLKPFITHRYSF--KDAVEAFEETS 341          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: YDJL_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjL OS=Escherichia coli (strain K12) GN=ydjL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 53/153 (34.64%), Postives = 76/153 (49.67%), Query Frame = -2
Query:  181 GCQTDY--RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNT-WPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVM 630
            G Q D   R  VAK+LGA  +V  ST  +D+    ++I      G+ +  +C+G N  +  A+   R  G+V  VGMG + +   +    A    ++G   Y +T W   +  L SG I VKP+ITHR G SQ    E F+      TAIKV+
Sbjct:  206 GLQEDVAVRFPVAKELGATAVVNGST--EDVVARCQQICGKDNLGLVI--ECSGANIALKQAIEMLRPNGEVVRVGMGFKPLDFSINDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQ--WREGFDAMV-DKTAIKVI 351          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: TDH_BURP8 (L-threonine 3-dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = -2
Query:  202 DYRLSVAKKLGADNIVKVSTN-LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 618
            DYRL +A+K+GA   V VS   L+D+  ++      M  G DV  + +G     ++ L A   GGK+ L+G+   +  +  T    + +++ G++  +   TW   +  L+SG +D+ P++THRF     + E+AF T   G
Sbjct:  198 DYRLELARKMGATRAVNVSRETLRDVMRDLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLGIPPAQTAIDWTQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPILTHRFAVD--DYEKAFATMLSG 331          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: YDJJ_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein ydjJ OS=Escherichia coli (strain K12) GN=ydjJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = -2
Query:  211 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA-----REVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS 612
            RL++A++LGA  ++  +   +D     ++  + MG   D+ F+ AG   T+  A      GGK+ +VG      TVP   A       REV +  VFRY N +P+ +E + SG+ DVK ++TH + +  ++V++AFE S
Sbjct:  205 RLAMAEQLGATVVINGAK--EDTIARCQQFTEDMGA--DIVFETAGSAVTVKQAPYLVMRGGKIMIVG------TVPGDSAINFLKINREVTIQTVFRYANRYPVTIEAISSGRFDVKSMVTHIYDY--RDVQQAFEES 331          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: XYLD_RHILO (Putative D-xylulose reductase OS=Rhizobium loti GN=mlr4915 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  202 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 504
            G D+ F+ +G  K  +      R GG V LVG+    + + +  A ++EV +  VFRY N +   L+ + SGK+D+KPLIT  + F+  +  +AFE +A+G
Sbjct:  234 GADIVFEASGSPKAFADLFDVVRPGGAVVLVGLPVEPVALNVPAAISKEVRIETVFRYANIFDRALQLIASGKVDLKPLITGTYDFA--DSIKAFERAAQG 332          
BLAST of CF835430 vs. ExPASy Swiss-Prot
Match: TDH_PYRHO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus horikoshii GN=tdh PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = -2
Query:  172 TDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA-REVDVVGVF--RYKNTWPLCLEFLRSGKIDVKPLITHRF-GFSQKEVEEAFETSARGGTAIKVMFNL 621
            +D+R  +AKK+GAD ++      +D+ +EV  I    G G+DV  + +G  K +   L A    G+V L+G+   ++T+        + + + G+       TW      L+SGK+++ P+ITH++ GF   + EEAFE    G T  KV+F L
Sbjct:  201 SDFRRELAKKVGADYVINPFE--EDVVKEVMDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFD--KYEEAFELMRAGKTG-KVVFML 347          
The following BLAST results are available for this feature:
BLAST of CF835430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
DHSO2_YEAST9.481e-1532.24Sorbitol dehydrogenase 2 OS=Saccharomyces cerevisi... [more]
DHSO1_YEAST9.481e-1532.24Sorbitol dehydrogenase 1 OS=Saccharomyces cerevisi... [more]
XYL2_YEAST2.335e-1334.31D-xylulose reductase OS=Saccharomyces cerevisiae G... [more]
YDJL_ECOLI2.582e-1234.64Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_BURP82.186e-1130.28L-threonine 3-dehydrogenase OS=Burkholderia phymat... [more]
YDJJ_ECOLI6.359e-1133.09Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
XYLD_RHILO6.359e-1135.64Putative D-xylulose reductase OS=Rhizobium loti GN... [more]
TDH_PYRHO6.359e-1131.82Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835430 ID=CF835430; Name=CF835430; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTATACCCTTTAAGGACAATTCCATTTTATTTCATCTTTTGCCC
AAACGTTTACATGTACGTTGTATTTTACAGATTAAACATGACCTTGAGTG
CAGTTCGTTGTATTTGACAGATTAAACATGACCTTGATTGCAGTACATTG
TATTTTACAGATTAAACATTACAGATTAAACATGACCTTGATTGCAGTAC
CACCACGAGCACTTGTTTCAAAGGCCTCTTCCACTTCTTTCTGGGAGAAA
CCAAACCTATGCGTGATAAGGGGCTTTACATCAATCTTTCCGCTTCTAAG
GAACTCCAGACACAGTGGCCAGGTGTTCTTGTAGCGAAACACCCCCACCA
CATCCACCTCCCTTGCAGCAGCTGGGGTGAGTGGGACAGTCATTTCACGA
TGACCCATCCCCACGAGGCAAACTTTACCACCTGCACGAGTAGCACTCAG
TGCTGTTGACATGGTTTTGTTAAAGCCTGCACAATCAAAGCTCACATCTA
TTCCTGTCCCCATGGCTTTCTGTATCTTTTCCACTTCTTCAGCTATGTCC
TGCAAATTTGTTGAAACTTTAACAATATTATCTGCACCAAGTTTCTTTGC
AACAGATAAACGATAGTCAGTTTGGCAACCTCAATCATTCATATATTGAT
CTAGCAATGGATGCTAAAAAACTAATGCTAGCAATCTTTCTCCT
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