CF835464

Overview
NameCF835464
Unique NameCF835464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = -1
Query:  164 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 502
            NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  178 NYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13
Identity = 36/113 (31.86%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  164 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 502
            NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  178 NYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = -1
Query:  164 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 502
            NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:  178 NYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  260 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 397
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 36/113 (31.86%), Postives = 55/113 (48.67%), Query Frame = -1
Query:  164 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 502
            NY   G A   D L  P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  179 NYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of CF835464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_ORYSJ1.096e-1433.63Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.212e-1331.86Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE5.093e-1232.74Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY8.688e-1263.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHI4_PHAVU1.935e-1131.86Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835464 ID=CF835464; Name=CF835464; organism=Citrus sinensis; type=EST; length=505bp
ATTTANTTANAATAAGAGGGTAACCCTTTAAATGTCCACCTACAAGTGTG
ACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAA
CGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAG
GCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTG
CCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCC
AACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGT
ATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCG
TCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCA
GAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGT
CTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAA
TTGCA
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