CF835467
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 1.150e-41 Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE---GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS+ + KTLE+Y +CS E NR + +++ EYL+LK VE LQR+QRNLLGE LD L ELE LE QL++SLK Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLK 139
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.502e-41 Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELS+LCDAE ALI+FS RG+L+EF SS + KTLERY C+ + + P E + YQEYL+LKT VE LQ +QRN+LGE L PLS ELEQLE+Q+E SLK Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAP--ENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLK 134
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 1.502e-41 Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELS+LCDAE ALI+FS RG+L+EF SS + KTLERY C+ + + P E + YQEYL+LKT VE LQ +QRN+LGE L PLS ELEQLE+Q+E SLK Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAP--ENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLK 134
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 3.699e-40 Identity = 89/135 (65.93%), Postives = 101/135 (74.81%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469 MGRGRVELKR+EN INR+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF S+ I KTLERY C A + N ETQS Y E +LK E LQR+QR+LLGE L PLS EL+QLE QLE +L Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-ITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 134
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 4.831e-40 Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIM-KTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRG+VELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE AL++FS RGKLYEFCSSP M +T+++Y + S + N+ + Q YQ+YL+LK+ VE+LQ SQR+LLGE L + NELE LE Q++ SL+ Sbjct: 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLR 137
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 6.309e-40 Identity = 89/139 (64.03%), Postives = 104/139 (74.82%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE---GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS + +TLERY + S G + N+ QS+ EYL+LK VE LQR+QRNLLGE L L ELEQLE QL++SL+ Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLR 139
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40 Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRC-----SCGAHEGNRPPIETQ-STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469 MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RG+L+EF +S + KTLERY C SC A +ET+ S YQEYL+LKT VE LQ +QRNLLGE L PLS ELEQLE+Q+E SL Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAA----LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISL 137
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40 Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRC-----SCGAHEGNRPPIETQ-STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469 MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RG+L+EF +S + KTLERY C SC A +ET+ S YQEYL+LKT VE LQ +QRNLLGE L PLS ELEQLE+Q+E SL Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAA----LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISL 137
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 6.976e-39 Identity = 91/137 (66.42%), Postives = 103/137 (75.18%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPI--ETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469 MGRGRVELKR+EN INR+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF S+ I KTLE+Y+ C A N E QS YQE RLKT +E LQRSQR++LGE L PLS EL+QLE QLE SL Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSL 136
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 1.190e-38 Identity = 83/137 (60.58%), Postives = 105/137 (76.64%), Query Frame = 2 Query: 65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPI-ETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472 MGRG+V L+R+EN I+R+VTFA+RRNGLL KA ELS+LCDAE AL++FS G+LY+F SS ++KTLERY R + + P E Q+ YQEY+ LK VE+LQ+SQRNLLGE L PL+TNELEQLE Q+ +LK Sbjct: 1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLK 137 The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 106
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bpback to top |