CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.150e-41
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE---GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS+  + KTLE+Y +CS    E    NR   + +++  EYL+LK  VE LQR+QRNLLGE LD L   ELE LE QL++SLK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLK 139          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.502e-41
Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELS+LCDAE ALI+FS RG+L+EF SS  + KTLERY  C+  + +   P  E +  YQEYL+LKT VE LQ +QRN+LGE L PLS  ELEQLE+Q+E SLK
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAP--ENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLK 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.502e-41
Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELS+LCDAE ALI+FS RG+L+EF SS  + KTLERY  C+  + +   P  E +  YQEYL+LKT VE LQ +QRN+LGE L PLS  ELEQLE+Q+E SLK
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAP--ENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLK 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.699e-40
Identity = 89/135 (65.93%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRGRVELKR+EN INR+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF S+  I KTLERY  C   A + N    ETQS Y E  +LK   E LQR+QR+LLGE L PLS  EL+QLE QLE +L
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-ITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.831e-40
Identity = 83/137 (60.58%), Postives = 106/137 (77.37%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIM-KTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+VELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE AL++FS RGKLYEFCSSP  M +T+++Y + S    + N+   + Q  YQ+YL+LK+ VE+LQ SQR+LLGE L  +  NELE LE Q++ SL+
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLR 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.309e-40
Identity = 89/139 (64.03%), Postives = 104/139 (74.82%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE---GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RGKLYEFCS   + +TLERY + S G  +    N+     QS+  EYL+LK  VE LQR+QRNLLGE L  L   ELEQLE QL++SL+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLR 139          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRC-----SCGAHEGNRPPIETQ-STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RG+L+EF +S  + KTLERY  C     SC A       +ET+ S YQEYL+LKT VE LQ +QRNLLGE L PLS  ELEQLE+Q+E SL
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAA----LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISL 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40
Identity = 91/141 (64.54%), Postives = 107/141 (75.89%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRC-----SCGAHEGNRPPIETQ-STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG+VELKR+EN I+R+VTFA+RRNGLL KA ELSVLCDAE ALI+FS RG+L+EF +S  + KTLERY  C     SC A       +ET+ S YQEYL+LKT VE LQ +QRNLLGE L PLS  ELEQLE+Q+E SL
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAA----LETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISL 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 6.976e-39
Identity = 91/137 (66.42%), Postives = 103/137 (75.18%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPI--ETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRGRVELKR+EN INR+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF S+  I KTLE+Y+ C   A   N      E QS YQE  RLKT +E LQRSQR++LGE L PLS  EL+QLE QLE SL
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSL 136          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.190e-38
Identity = 83/137 (60.58%), Postives = 105/137 (76.64%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPI-ETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+V L+R+EN I+R+VTFA+RRNGLL KA ELS+LCDAE AL++FS  G+LY+F SS  ++KTLERY R    + +   P   E Q+ YQEY+ LK  VE+LQ+SQRNLLGE L PL+TNELEQLE Q+  +LK
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLK 137          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
MADS7_ORYSI1.150e-4164.75MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS1_ORYSJ1.502e-4163.97MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.502e-4163.97MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ3.699e-4065.93MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AGL3_ARATH4.831e-4060.58Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS8_ORYSJ6.309e-4064.03MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS5_ORYSJ8.240e-4064.54MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI8.240e-4064.54MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD17_ORYSJ6.976e-3966.42MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD34_ORYSJ1.190e-3860.58MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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