CF835473
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18 Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W+P T+LGRLV EG++ + E+ LPIKE+QIID L+ L+DEV+ I VQ+ T +G+R +F+ V+VG+ DG++G+G +V AI+ I AKL+V+ Sbjct: 9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVV 112
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18 Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488 WVP T+LG+LV EG++ S+++ LPI+E QIID L+ L+DEV+ I VQ+ T +G+R +F+A V+VG+ +G+VGLG +V AIR AI AKL++ Sbjct: 7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18 Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488 WVP T+LG+LV EG++ S+++ LPI+E QIID L+ L+DEV+ I VQ+ T +G+R +F+A V+VG+ +G+VGLG +V AIR AI AKL++ Sbjct: 7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18 Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W P T LGRLV EGKI+S+++++ ++PI+E +IIDTL+ LK EV+ + VQ+QT +G+ ++++ V VG+ DG+VG+G+ S+++ AI A AKL+++ Sbjct: 4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLL-PGLKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIV 107
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18 Identity = 47/105 (44.76%), Postives = 75/105 (71.43%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W P T +G LV+EGKI S+++++ +LPI E +I+D L+ KLK EV+ I VQKQT AG+ +R+K V++G+ DG+V +G +K++ AI+ AI AK+++I Sbjct: 12 EWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNII 115
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18 Identity = 46/105 (43.81%), Postives = 74/105 (70.48%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W P TKLGR+V+EG+I+++++++ I E +I+D L+ L++EV+ + VQK ++G+R RF+ VVVG+ DG VG+G ++EV AIR AI AKL++I Sbjct: 9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNII 112
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18 Identity = 45/105 (42.86%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +WVP+T LGR+V+ G+I+S+++I PIKE +I+D + L DEV+ I VQ+ T +G+R +F+A VVVG+ DG++G G +V AI+ AI+ AK++++ Sbjct: 7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLV 110
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18 Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W+P+T LGR+V G+I S++++ PIKE QI+D L+ L+DEV+ I VQ+ T +G+R +F+ VVVG+ +G+VG G +V AI+ AI+ AKL++I Sbjct: 7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLI 110
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18 Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488 +WVP T++GR+V+EGKI S+ +++ +LPI E +I+D L+ LK EV+ + VQK T AG+ TR + VV+G+ DG VGLG+ +K++ AI+ A+ AKL++ Sbjct: 9 EWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNI 111
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.268e-17 Identity = 45/105 (42.86%), Postives = 74/105 (70.48%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W P T +G LV+ GKI S+++++ +LPI E +I+D L+ KLK EV+ I VQKQT AG+ +R+K V++G+ DG+V +G +K++ AI+ AI AK++++ Sbjct: 12 EWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIL 115 The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bpback to top |