CF835473

Overview
NameCF835473
Unique NameCF835473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+P T+LGRLV EG++ + E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+
Sbjct:    9 EWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVV 112          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNI 108          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+ +  VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLL-PGLKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIV 107          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 47/105 (44.76%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P T +G LV+EGKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++I
Sbjct:   12 EWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNII 115          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18
Identity = 46/105 (43.81%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+ +  VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I
Sbjct:    9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNII 112          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18
Identity = 45/105 (42.86%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++
Sbjct:    7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLV 110          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 46/105 (43.81%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+P+T LGR+V  G+I S++++     PIKE QI+D L+   L+DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I
Sbjct:    7 EWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLI 110          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488
            +WVP T++GR+V+EGKI S+ +++  +LPI E +I+D L+   LK EV+ +  VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++
Sbjct:    9 EWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNI 111          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.268e-17
Identity = 45/105 (42.86%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P T +G LV+ GKI S+++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++
Sbjct:   12 EWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIL 115          
The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METTP1.957e-1844.7630S ribosomal protein S5P OS=Methanosaeta thermoph... [more]
RS5_METMA1.957e-1847.5730S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METAC1.957e-1847.5730S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_THEPD2.556e-1842.8630S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_SULSO2.556e-1844.7630S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_METKA3.338e-1843.8130S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_METHJ3.338e-1842.8630S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_METMJ9.712e-1843.8130S ribosomal protein S5P OS=Methanoculleus marisn... [more]
RS5_IGNH49.712e-1845.1930S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_SULIN1.268e-1742.8630S ribosomal protein S5P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bp
TTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAACACACAAG
AACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGG
CTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCC
GCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTC
GGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCT
CCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTATCGGCC
ACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACA
CGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACAC
GGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTG
CCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
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