CF835473
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15 Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 W P T+LGR V +G+I S++ LP+KE +++D L+ L+DEV+ I VQ+ T +G+R +F+ VV+G+ DG+VG +V AI+ AI +AKL++I Sbjct: 5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNII 107
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15 Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 WVPVT LG+ V G+ S ++I PIKE I+D ++ L DEV+ I +Q+ T +G+R +F+A VV+G+ +G+VG G +V TAI+ AI AKL+++ Sbjct: 8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIV 110
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.892e-15 Identity = 41/104 (39.42%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 W P T+LGR+V++G + S+EQ LP+KE +++D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ +G +G +V +AI+ AI +AKL++I Sbjct: 11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLI 113
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14 Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 3 Query: 177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 +W P TKLGRLV+EGKI ++++I + I+E +I+D L+ + L+ E MK + QK+T G +TR++ +VGD DGHVG+G+ S ++ A AI AKL++I Sbjct: 6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNII 122
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14 Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 W P T+LG+ V EG+I S+++ LP+KE +++D L+ L+DEV+ I VQ+ T +G+R +F+ V VG+ DG +G +V AI+ AI +AKL++I Sbjct: 7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNII 109
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14 Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491 W P T+LG LV++G++ + + LP+KE +I+D L+ L DEV+ I VQ+ T +G+R +F+ V +G+ DG+VG +V AI+ AI +AKL++I Sbjct: 7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNII 109
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3 Query: 180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488 WVP T LG+ V G+I SLE+I I+E II L+ LK EV+ + +QK T GQ TRFKA V G+ +G++G+G +K++ AI A A L+V Sbjct: 27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNV 128 The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bpback to top |