CF835473

Overview
NameCF835473
Unique NameCF835473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNII 107          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.025e-15
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIV 110          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.892e-15
Identity = 41/104 (39.42%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLI 113          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I
Sbjct:    6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNII 122          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNII 109          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I
Sbjct:    7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNII 109          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSV 488
            WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNV 128          
The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_NATPD2.025e-1541.3530S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_METLZ2.025e-1542.3130S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_HALWD5.892e-1539.4230S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_NANEQ1.005e-1438.9830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_HALMA1.005e-1440.3830S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_HALSA2.239e-1439.4230S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_CENSY4.669e-1242.7230S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bp
TTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAACACACAAG
AACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGG
CTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCC
GCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTC
GGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCT
CCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTATCGGCC
ACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACA
CGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACAC
GGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTG
CCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
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