CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 53/219 (24.20%), Postives = 99/219 (45.21%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            ++    ++TGA +G+G+E  +  A AG  +V +    D    + DEI +    +A A   D+ ++   + +    A     ++D+L+NNAG  G    P D    ++    + N+   + +S+ V   M                      +    +YASSKA  + + + MA +LG  NIRVN I+PG  +++  + ++  + +    L+  P+R  G
Sbjct:    9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSE-QELSALADFAISKLGKVDILVNNAG--GGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINM---TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPE-IEQKMLQHTPIRRLG 219          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHKR_STRCM (Monensin polyketide synthase putative ketoacyl reductase OS=Streptomyces cinnamonensis PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 60/197 (30.46%), Postives = 92/197 (46.70%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQ 608
            V +VTGA+SG+G      LA  G L+   AR    + +    +     + A    LDV  DGA++ + VQ A + + RIDVL+NNAG  G   +  D T+E WD  I TNL   + +++ V                       +G +  G  Y++SK G+   TK +  EL    I VN++ PG   + + + + Q
Sbjct:    8 VALVTGATSGIGLATARLLAAQGHLVFLGARTESDVIATVKALRN-DGLEAEGQVLDV-RDGASVTAFVQAAVDRYGRIDVLVNNAGRSGGGVT-ADLTDELWDDVIDTNLNSVFRMTRAVLTTGGMRTRERGRIINVASTAGKQGVVL-GAPYSASKHGVVGFTKALGNELAPTGITVNAVCPGYVETPMAQRVRQ 200          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y5909_MYXXD (Uncharacterized oxidoreductase MXAN_5909 OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_5909 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSP-LDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEIT 593
            E++    +VTGASSGLGR   L LAR G  + AA R   +L++L DE  + + +    VELDV    A +E       EA   +D+++ NAGV G+  +  L W  E     I TN+TG+      V  +M +                 RG L G  AY++SKA L++  + + ++L    +RV  I PG   SE+T
Sbjct:    3 EMSYRTALVTGASSGLGRGLALWLARRGVRVFAAGRRLPQLQALRDEA-QAAGVTVEPVELDVTKADATLERIRALDAEA-GGLDLVVANAGVGGTTNAKRLPW--ERVRGIIDTNVTGAAATLSAVLPQMVE--RKRGHLVGVSSLAGFRG-LAGHAAYSASKAFLSTFMESLRVDLRGTGVRVTCIYPGFVKSELT 193          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 57/190 (30.00%), Postives = 90/190 (47.37%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            ++   VV +TGA+SGLG+   +   +    +V       +  +   E    +   AV V+ DV  +   +++ VQ A + F  +D++INNAG+   V S  +   ++WD  I TNLTG++L S+       +                     P  V YA+SK G+  MT+ +ALE     IRVN+I PG
Sbjct:    4 DLKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKE-EDVKNIVQTAIKEFGTLDIMINNAGLENPVPSH-EMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVI--PWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPG 189          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: YOXD_BACSU (Uncharacterized oxidoreductase yoxD OS=Bacillus subtilis GN=yoxD PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 54/198 (27.27%), Postives = 94/198 (47.47%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGV--AYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEIT 593
            +     ++TG   G+GR   L LA+ G  I    R    ++ + +E+ K   ++A     DV  D   +  +V +  E    ID+LINNAG+       LD + +EW++ I+ NL G + V++ V   M +                  GQ    V  AY++SK  +  +T+ +  E+  HNIRV++++P    S+++
Sbjct:    4 LQHKTALITGGGRGIGRATALALAKEGVNIGLIGRTSANVEKVAEEV-KALGVKAAFAAADV-KDADQVNQAVAQVKEQLGDIDILINNAGI-SKFGGFLDLSADEWENIIQVNLMGVYHVTRAVLPEMIERKAGDIINISSTA-----GQRGAAVTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTPSTVASDMS 193          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 61/219 (27.85%), Postives = 93/219 (42.47%), Query Frame = 3
Query:   12 DNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAI--ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            + V +VT ++ G+G      LA+ G  +V ++R    +    D+         ++V   VC  G A   E  V  A +    ID+L++NA V     S +D TEE WD  +  N+    L++K V   M                       PG   Y  SK  L  +TK +A+EL   NIRVN ++PGL  +  +  L   K       +T+ +R  G
Sbjct:   14 NKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNV----DQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPS---PGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLG 225          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 61/219 (27.85%), Postives = 93/219 (42.47%), Query Frame = 3
Query:   12 DNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAI--ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            + V +VT ++ G+G      LA+ G  +V ++R    +    D+         ++V   VC  G A   E  V  A +    ID+L++NA V     S +D TEE WD  +  N+    L++K V   M                       PG   Y  SK  L  +TK +A+EL   NIRVN ++PGL  +  +  L   K       +T+ +R  G
Sbjct:   14 NKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNV----DQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPS---PGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLG 225          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 57/219 (26.03%), Postives = 98/219 (44.75%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE--EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTS 668
            V +VTGASSG G          G  + A     + L+          + + + V  DV AD   + +++    E F  IDVL+NNAG+ G+ ++ +  T   E++D  +  N+ G +L  + V   M                       PG  AY +SK  +  +TK +A++     IR N++ PG+  + +T+  + +  L +  L  +P +E GT+
Sbjct:    4 VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV-ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHM---LLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTA 218          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 63/213 (29.58%), Postives = 97/213 (45.54%), Query Frame = 3
Query:   21 VMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            V+VTGA  G+GR     L   G  +VA +R    L SL  E      I  V V+L    D  A E    +A  +   +D+L+NNA V   ++  L+ T+E +D + + NL     VS+ V   +                   +  +     Y S+K  L+ +TKVMALELG H IRVN+++P + ++ + +            L  +PL +F
Sbjct:   10 VLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDL---GDWEATE----RALGSVGPVDLLVNNAAV-ALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGL--IARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 58/205 (28.29%), Postives = 95/205 (46.34%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWT-EEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGV--HNIRVNSISPGLFISEITEGLMQK 611
            + D VV++TGASSG+G E    L+  G  +V  AR  DRL+ +  ++   S    V+++         + + ++ A+  F RIDVLINNAG+    +S L+   ++EW+  I  N+ G       V   MR                      PG   Y  +K  + ++T+ +  E  +   NIR   +SPG   +E+T+ +  K
Sbjct:    4 VKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQKVGHDS----VSIKKTDVTKPDEVNALIETAYNDFGRIDVLINNAGL--MPQSFLEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVV---FPGSAVYCGTKYAVRAITEGLRQEEAIVGSNIRTTILSPGAVSTELTDHISDK 199          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
HDHA_ECO571.462e-1224.207-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
DHKR_STRCM1.462e-1230.46Monensin polyketide synthase putative ketoacyl red... [more]
Y5909_MYXXD1.910e-1233.84Uncharacterized oxidoreductase MXAN_5909 OS=Myxoco... [more]
DHG_BACSU1.910e-1230.00Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
YOXD_BACSU2.494e-1227.27Uncharacterized oxidoreductase yoxD OS=Bacillus su... [more]
DHRS4_PONAB2.494e-1227.85Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN2.494e-1227.85Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
HCDR_XANP23.258e-1226.032-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
DCXR_HUMAN3.258e-1229.58L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
Y1627_STAS14.255e-1228.29Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
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