CF835530

Overview
NameCF835530
Unique NameCF835530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835530 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  131 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 601
            S+  AL  L   +  P  + Q W     +PC   W  +TC+  +RVT++ L    LSG L    L KL  L  L+L  NN+ G +P +     +L  L+L NN  +G    SL+++  L +L L  N+  GQI  +   + SL  +D S N    ++P +
Sbjct:   30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185          
BLAST of CF835530 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 2
Query:  233 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 595
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
The following BLAST results are available for this feature:
BLAST of CF835530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SRF6_ARATH2.709e-1131.88Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
Y1765_ARATH3.539e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835530 ID=CF835530; Name=CF835530; organism=Citrus sinensis; type=EST; length=678bp
GAGAGCCATGGCGGCGGCGGCGGCGGCGGCGGAAGCGGCAGTGCAGTGGT
TGAGTGTGTGTATAACGTTCAGCATAAGCCTAATAATAATAATAGGGAGC
AGCAGCTTGGTGGCGGTGGCGAGTGGAAACTCGGAAGGGGACGCGCTGTA
CGCGCTCAGGAGAAGCTTATCAGATCCCGATAACGTGCTTCAGAGCTGGG
ATCCAACTCTCGTCAATCCCTGCACTTGGTTTCACATAACCTGTAATCAG
GACAACCGCGTTACTCGACTGGATTTGGGTAATTCAAATCTATCCGGCCG
TCTCGTCCCTGAACTGGGCAAGCTCGAGCATTTGCAATACCTGGAACTTT
ACAAAAACAACATCCAAGGAACTATCCCTGTCGAGCTCGGTAACTTGAAG
AGCCTCATCAGCTTGGACTTGTATAATAACAACATCTCGGGGAAAATCCC
TCCTTCCTTGGCTAAATTGAAATCTCTTGTTTTTTTGCGGCTTAACGATA
ATCGGCTAACTGGACAAATTCCCAGGGAACTTGTTGGAATTTCAAGTCTC
AAAGTTGTGGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACAAG
CGGACCATTTGAACACATCCCACTNCAACACTTTGAGAATAACCCTCGAT
TAGAAGGTCCAGAGTTGCTGGGACTTGC
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