CF835562

Overview
NameCF835562
Unique NameCF835562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.193e-89
Identity = 160/222 (72.07%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI T TP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++G+DMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.864e-89
Identity = 162/222 (72.97%), Postives = 182/222 (81.98%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE R AQRAEG ATILAI T+TP NCV Q+ YPDYYF ITNSEH T            SMI+KR+M LTEEILK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPG DYQL +L+GL P VKR+M+YQQGC+ G T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS +H+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFVGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.864e-89
Identity = 161/222 (72.52%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRA+G ATI+AI TATP NCV Q+ YPDYYF ITNSEHMT            SMI KR+M LTEEILK NPN+C +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T++RLAKDLAENNKG+RVLVVCSE T  TFRGPS TH+DS+VGQALF D AAA+
Sbjct:    1 MVTVEEVRRAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDRAAAM 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.741e-89
Identity = 162/220 (73.64%), Postives = 183/220 (83.18%), Query Frame = 3
Query:   75 TMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            +++EIR AQRA+G A ILAI TA P N VIQA+YPDYYF ITNSEHMT            S IRKRHM +TEE LK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENN+G+RVLVVCSE T  TFRGPS TH+DSLVGQALF+DGAAAL
Sbjct:    8 SLDEIRKAQRADGPAGILAIGTANPANYVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHVTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAAL 227          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.741e-89
Identity = 161/222 (72.52%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R A+RAEG ATILAI TATP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH+ FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVFFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.885e-89
Identity = 160/222 (72.07%), Postives = 185/222 (83.33%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI TATPPN V Q+ YPD+YF +TNSEH              S I+KR+M LTEEILK NPN+C +M  SLDARQD+ +VE+PKLGKEAAT+AIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMVVVEIPKLGKEAATRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.885e-89
Identity = 161/222 (72.52%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE R AQRAEG AT++AI TATP NCV Q+ YPDYYF ITNSEH T            SMI+KR+M LTEEILK NP+MC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPG DYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGA A+
Sbjct:    1 MVTVEEYRKAQRAEGPATVMAIGTATPTNCVDQSTYPDYYFRITNSEHKTDLKEKFKRMCEKSMIKKRYMHLTEEILKENPSMCEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAGAI 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.380e-89
Identity = 161/220 (73.18%), Postives = 183/220 (83.18%), Query Frame = 3
Query:   75 TMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            +++EIR AQRA+G A IL I TA P N VIQA+YPDYYF ITNSEHMT            SMIRKRHM LTE+ LK NPNMC +M  SLDARQDI +VEVPKLGKEAA +AIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENN+G+RVLVVCSE T  TFRGPS TH+DSLVGQALF+DGAAAL
Sbjct:    7 SLDEIRKAQRADGPAGILGIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFQRMCDKSMIRKRHMHLTEDFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAAL 226          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.380e-89
Identity = 160/222 (72.07%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRA+G ATI+AI T+TP NCV Q+ YPDYYF ITNSEH+             SMI+KR+M LTEEIL  NPN+C +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T++RLAKDLAENNKG+RVLVVCSE T  TFRGPS  H+DSLVGQALF DGAAAL
Sbjct:    1 MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILTENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAL 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.380e-89
Identity = 161/222 (72.52%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG ATILAI TATP NCV Q+ YPDYYF ITNS+HMT            SMI KR+M LTEEILK NP+ C +M  SLDARQDI +VEVPKLGKEAA  AIKEWGQPKS ITH+IFCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LR+AKDLAENNK +RVLVVCSE T+ TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVDQSTYPDYYFRITNSDHMTDLKQKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIVVVEVPKLGKEAAQSAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNKAARVLVVCSEITVVTFRGPNETHLDSLVGQALFGDGAAAI 222          
The following BLAST results are available for this feature:
BLAST of CF835562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS1_IPOBA2.193e-8972.07Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSA_SOLTU2.864e-8972.97Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS2_SOLLC2.864e-8972.52Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_CARAN3.741e-8973.64Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS7_IPOBA3.741e-8972.52Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHSY_HYDMC4.885e-8972.07Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHSA_PETHY4.885e-8972.52Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHSY_MATIN6.380e-8973.18Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSE_IPOPU6.380e-8972.07Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSD_IPONI6.380e-8972.52Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835562 ID=CF835562; Name=CF835562; organism=Citrus sinensis; type=EST; length=736bp
CGCGAAAGCGCACACTTATTAATTAACTAAGTTTAAGTACTGTTTTGGAA
GCAATCTGACGATCAGAGATGGTAACCATGGAGGAGATTAGAAACGCTCA
GCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGC
CCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACC
AACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGA
GAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAA
AAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGC
CAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAAC
CAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCA
TTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTC
ACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCA
ACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATTTGG
CTGAAAACAACAAGGGCTCTCGTGTTCTTGTTGTTTGTTCTGAGAACACA
ATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTCTTTAGTGGG
TCAGGCTCTTTTCGCTGATGGGGCTGCTGCACTGAT
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