CF835562

Overview
NameCF835562
Unique NameCF835562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.856e-88
Identity = 161/222 (72.52%), Postives = 182/222 (81.98%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+E+IR AQRAEG AT++AI TATP NCV Q+ YPDYYF ITNSEH T            SMIRKR+M LTEE LK NPNM  +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LR+AKDLAENN G+RVLVVCSE T  TFRGPS +H+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEDIRRAQRAEGPATVMAIGTATPENCVDQSTYPDYYFRITNSEHRTDLKEKFKRMCEKSMIRKRYMHLTEEFLKENPNMTAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.167e-88
Identity = 160/219 (73.06%), Postives = 181/219 (82.65%), Query Frame = 3
Query:   78 MEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            +EEIRN QRA+G A ILAI TATP NCV QADYPDYYF ITNSEHMT            SMIRKR+M +TEE LK NPN+C +   SLDARQD+ +VEVP+LGKEAA+KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN G+RVLVVCSE T  TFRGPS +H+DSLVGQALF DGAAA+
Sbjct:    9 IEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLVVVEVPRLGKEAASKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGARVLVVCSEITAVTFRGPSDSHLDSLVGQALFGDGAAAV 227          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.167e-88
Identity = 160/222 (72.07%), Postives = 183/222 (82.43%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+EE+R AQRAEG AT+LAI TATP NCV Q+ YPDYYF ITNSEHMT            S I++R+M LTEEILK NP MC +M  SLDARQDI +VEVP+LGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LR+AKDLAENN G+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    1 MVTVEEVRRAQRAEGPATVLAIGTATPANCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSNIKRRYMHLTEEILKENPAMCEYMAPSLDARQDIVVVEVPRLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.167e-88
Identity = 162/222 (72.97%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV++ EIR AQRAEG ATILAI TATP NCV Q+ YPD+YF ITNSEH T            SMI++R+M LTEEILK NP++C +M  SLDARQD+ +VEVP+LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS TH+DSLVGQALF DGAAAL
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAAL 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.054e-88
Identity = 158/221 (71.49%), Postives = 181/221 (81.90%), Query Frame = 3
Query:   72 VTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            VT+EE+R AQRA G AT+LAI TATP NCV QADYPDYYF IT SEHMT            S IRKR+M LTEE L  NPNMC +M  SLDARQDI +VEVPKLGK AA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+++GL P VKR+M+YQQGC+AG T+LR+AKDLAENN+G+RVLVVCSE T  TFRGPS +H+DS+VGQALF DGAAA+
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAV 226          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.054e-88
Identity = 157/221 (71.04%), Postives = 182/221 (82.35%), Query Frame = 3
Query:   72 VTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            +T+EE+R AQRAEG AT+LAI TATP NCV QADYPDYYF IT S+HM             S IRKR+M LTEEIL+ NPNMC +M  SLDARQDI +VEVPKLGK AA KAIKEWGQP+S ITHL+FCT++GVDMPGADYQLT+++GL P VKR+M+YQQGC+AG T+LRLAKDLAENN+G+RVLVVCSE T  TFRGP  +H+DSLVGQALF DGAAA+
Sbjct:    5 MTVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPRSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGAAAV 225          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 9.213e-88
Identity = 160/221 (72.40%), Postives = 180/221 (81.45%), Query Frame = 3
Query:   72 VTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            + +  IR AQR +G ATILAI TATP NCV QADYPDYYF IT SEHM             SMIRKR+M LTEE LK NP++C +M  SLDARQD+ +VEVPKLGKEAATKAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+ TH+DSLVGQALF DGAAA+
Sbjct:    5 IDIAAIREAQRRQGPATILAIGTATPSNCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYMHLTEEYLKENPSLCEYMAPSLDARQDVVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAAAV 225          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.213e-88
Identity = 159/222 (71.62%), Postives = 182/222 (81.98%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MVT+ E+R AQRAEG ATILAI TATP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIK WGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVL+VCSE T+ TFRGPS  H+DSLVGQALF DGAAA+
Sbjct:    1 MVTVGEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKGWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSEAHLDSLVGQALFGDGAAAV 222          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.213e-88
Identity = 159/222 (71.62%), Postives = 181/222 (81.53%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            ++ +E IR AQRAEG ATILAI TATP NCV QADYPDYYF +T SEHM             SMIRKR+M +TEE LK NP+MC  M  SLDARQD+ +VEVPKLGKEAATKAIKEWG PKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGP+  H+DSLVGQALF DGAAA+
Sbjct:    7 VIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNEGHLDSLVGQALFGDGAAAV 228          
BLAST of CF835562 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.203e-87
Identity = 159/222 (71.62%), Postives = 184/222 (82.88%), Query Frame = 3
Query:   69 MVTMEEIRNAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNKGSRVLVVCSENTIPTFRGPSYTHIDSLVGQALFADGAAAL 734
            MV +EEIRNAQRA+G AT+LAI T+TP NCV Q+ YPDYYF ITNSEH T            SMI+KR+M LTEEIL+ NPN+C +M  SLDARQ+I +VEVPKLGKEAA KAIKEWGQ KS ITHL+FCT++GVDMPGADYQLT+L+GL   VKR+M+YQQGC+AG T+LRLAKDLAENNKG+RVLVVCSE T  TFRGPS +H+DSLVGQALF DGAAA+
Sbjct:    1 MVNVEEIRNAQRAQGPATVLAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEILQENPNICAYMAPSLDARQNIVVVEVPKLGKEAAQKAIKEWGQSKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAI 222          
The following BLAST results are available for this feature:
BLAST of CF835562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_PERFR1.856e-8872.52Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHSY_PETCR3.167e-8873.06Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_ANTMA3.167e-8872.07Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHS6_PEA3.167e-8872.97Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS4_SORBI7.054e-8871.49Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS2_SECCE7.054e-8871.04Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHSY_CALCH9.213e-8872.40Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS3_IPOBA9.213e-8871.62Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS3_GERHY9.213e-8871.62Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHSY_CATRO1.203e-8771.62Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835562 ID=CF835562; Name=CF835562; organism=Citrus sinensis; type=EST; length=736bp
CGCGAAAGCGCACACTTATTAATTAACTAAGTTTAAGTACTGTTTTGGAA
GCAATCTGACGATCAGAGATGGTAACCATGGAGGAGATTAGAAACGCTCA
GCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGC
CCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACC
AACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGA
GAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAA
AAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGC
CAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAAC
CAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCA
TTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTC
ACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCA
ACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATTTGG
CTGAAAACAACAAGGGCTCTCGTGTTCTTGTTGTTTGTTCTGAGAACACA
ATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTCTTTAGTGGG
TCAGGCTCTTTTCGCTGATGGGGCTGCTGCACTGAT
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