CF835563

Overview
NameCF835563
Unique NameCF835563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 2
Query:   14 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFA-LFNENQKQGPTSERNYGLFYP 535
            + NSYPP+ G F SD  EP +KP++ FL    + L+ N YP+FAY AN   I L YALF          N + Y NLFDA LD+++AA+  +  +++++VV+E+GWPS G                  L+R   SG GTP RP + +  YLF    +ENQKQ       +GL  P
Sbjct:   88 ITNSYPPNDGVFTSDA-EPYIKPIINFLVSNGAPLLANVYPYFAY-ANDQSIPLAYALFTQQ-----GNNDVGYQNLFDAMLDSIYAALENVGASNLQIVVSESGWPSEGGAG---ASIDNAGTYYANLIRHASSGDGTPKRPGESIETYLFGRCLSENQKQVLILSVIFGLSLP 252          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 70/181 (38.67%), Postives = 99/181 (54.70%), Query Frame = 2
Query:   26 YPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSA-ISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            +PPS G+F    + P+     ++L+ T + L+ N YP+F+Y  N  +I L YALF  +PG V       Y NLFDA +D   +A+       +V VVV+E+GWPS G +                L+  V  G GTP RP  P+  Y+FA+FNE+QK G  SER++GLF P++  VY   F
Sbjct:  165 FPPSQGTFSQGYMAPSR----QYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALFT-SPGTVVQDGSNAYQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAGGD---AATAANAQTYNQNLINHV--GQGTPKRP-GPIETYIFAMFNEDQKTGAESERHFGLFNPDKSPVYPINF 334          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 70/179 (39.11%), Postives = 97/179 (54.19%), Query Frame = 2
Query:   29 PPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            PPS+GSF  +     + P+++FL +T++ LM N YP+ A++ N   + + YALF  + G V       Y NLFD  +DA + AM     + VK+VV+E+GWPS G                  L+  V  G GTP  P   +  Y+FA+FNENQK     E+N+GLFYPN Q VY   F
Sbjct:  143 PPSAGSFTGEAAA-FMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNAS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGG---TAATPANARFYNQHLINHV--GRGTPRHP-GAIETYIFAMFNENQKDSGV-EQNWGLFYPNMQHVYPINF 312          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.944e-25
Identity = 68/182 (37.36%), Postives = 96/182 (52.75%), Query Frame = 2
Query:   20 NSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            N+ PPS+G          L+P+L FL + +  L+ N YP+FAY  N   I L +A F      V+  NGL Y+NLFDA +D+++AA+       VKVV++E+GWPS   +                L+  V  G+G+P +    L  Y+FA+FNEN K G   E+N+GLF PN    Y   F
Sbjct:  158 NTSPPSNGVLADK--SGFLRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATFVPGSTTVND-NGLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWPS---DQGFGATAQNARAYNQGLINHV--GNGSP-KKAGALESYIFAMFNENLKDGDELEKNFGLFKPNMSPAYAITF 330          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24
Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 2
Query:   11 ALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQV-DSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            A+ N++PPS+G F     +  +  +   L  T + L+ N YP+FAY  N   I L+YA FR     V D   GL    LFDA +DAV AA+       V+VVV+E+GWPS    +               L+  V  G GTP RP   L  Y+FA+FNEN K G  +E+++GLF P++   Y   F
Sbjct:  134 AVTNTFPPSNGVFA----QAYMTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRPGTTTVRDPNTGLTSQCLFDAMVDAVVAALERSGAPGVRVVVSESGWPS---ASGFAATADNARAYNQGLIDHV--GGGTPKRP-GALETYIFAMFNENFKTGELTEKHFGLFNPDKSPAYPIRF 309          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13J_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-O (Fragment) OS=Nicotiana tabacum GN=PR0 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.877e-23
Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 2
Query:   74 LKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTSERNYGLFYPNEQTVYDSPF 565
            + P+++FL + +  L+ N YP+F +  N   + L YALF          N   Y NLFDA LD+++ A+      +V+++V+E+GWPS G+                 L+  V  G+GTP +P   +  YLFA+F+EN K+G  +E+++GLF P+++  Y   F
Sbjct:    4 INPIIQFLARNNLPLLANVYPYFGHIYNTADVPLSYALFTQQ-----EANPAGYQNLFDALLDSMYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLIDHVKRGAGTPKKPGKTIETYLFAMFDENDKKGEITEKHFGLFSPDQRAKYQLNF 159          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 63/182 (34.62%), Postives = 98/182 (53.85%), Query Frame = 2
Query:    5 LGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQ--VDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQGPTS---ERNYGLFYP 535
            +G  +N+YPPS G FK D     L+P++ FL    S L+VN Y +F Y  N D +SL +AL + N      D  N L+Y N FDA LD+V+AA+       + VVV+E+GWP+ G                   +R  ++ +G+P R ++ +  Y+FA+F+E  +Q   +   E+ +G+F P
Sbjct:  157 MGPSRNTYPPSRGRFK-DEYRNFLQPVIGFLVNKRSPLLVNIYTYFGYM-NRD-VSLQFALLQPNSNNEFTDPNNQLRYLNFFDANLDSVYAALEKSGGGSLDVVVSESGWPTQGGPGASVPNAEAYVNN----LRLHVNKNGSPKR-QEAIETYIFAMFDEAPRQTSPNDEYEKYWGMFSP 330          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 57/169 (33.73%), Postives = 97/169 (57.40%), Query Frame = 2
Query:   32 PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKQ---GPTSERNYGLF 529
            PS+G F+ D+I   +  +++FL K ++ + +N YPF +   N D   L+YA F  +  +  + NG+ Y+N+FDA  D + +++ A+ + D+ ++V E GWP+ GD++               L+ R+ +  GTPLRP   + VYLF L +E+ K    GP  ER++G+F
Sbjct:  173 PSAGRFRPDIIGQ-MTQIVDFLGKNNAPITINIYPFLSLYGN-DDFPLNYAFF--DGAEPINDNGIDYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKH---ANAGSAYRFYNGLLPRLGTNKGTPLRP-TYIEVYLFGLLDEDAKSIAPGP-FERHWGIF 332          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.589e-16
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   32 PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK--QGPTSERNYGLF 529
            PS G F+++ I   +  +++FL +      VN YP+ +   N D   +DYA F  N   ++ G G  Y N+FDA  D +  A+    + ++ +++ E GWP+ GD N                +  +  G GTP RP  P++ YLF+L +E+ K  Q    ER++G+F
Sbjct:  169 PSGGDFRAN-IRDLMITIVKFLSENGGPFTVNIYPYISLYTNPD-FPVDYAFFDGNAQPLNDG-GTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGDSN---ANLDYAKKFNQGFMAHISGGKGTPRRP-GPIDAYLFSLIDEDAKSVQPGYFERHWGIF 329          
BLAST of CF835563 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 53/185 (28.65%), Postives = 90/185 (48.65%), Query Frame = 2
Query:   32 PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSMGDENEXXXXXXXXXXXXXXLVRRVLSGSGTPLRPKDPLNVYLFALFNENQK--QGPTSERNYGLFYPNEQTVYDSPFVSTSG 580
            PS G F+ ++ +  L  +++FL    +   +N YPF +   N     +++A F D  G   + NG  Y N+ DA  D +  ++    + ++ ++V E GWP+ GD+N                + R  +  GTP+RP   ++ YLF L +E+ K  Q    ER++G+FY + Q  Y     S +G
Sbjct:  174 PSDGDFRPEIRDLMLN-IVKFLSDNGAPFTINIYPFISLY-NDPNFPVEFAFF-DGTGTPINDNGRIYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGDKN---ANLMYARRYNQGFMNRQKANKGTPMRP-GAMDAYLFGLIDEDAKSIQPGNFERHWGIFYIDGQPKYQLSLGSGNG 351          
The following BLAST results are available for this feature:
BLAST of CF835563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13B_SOYBN6.194e-2639.43Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
E13B_MAIZE8.090e-2638.67Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
GUB2_HORVU6.848e-2539.11Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13C_HORVU8.944e-2537.36Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13A_HORVU9.889e-2437.63Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13J_TOBAC2.877e-2333.54Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_BRACM1.930e-1934.62Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E138_ARATH4.299e-1933.73Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E136_ARATH7.589e-1630.95Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH1.096e-1428.65Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835563 ID=CF835563; Name=CF835563; organism=Citrus sinensis; type=EST; length=650bp
TGCTTTAGGTGCCTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCA
AATCGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGT
AAGACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTC
TGCTAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATC
CCGGTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGAC
GCCCAACTCGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGA
CGTGAAGGTTGTGGTGACGGAGACTGGATGGCCGTCTATGGGTGACGAGA
ATGAGGCGGGTGCTGGTGCGGCCAATGCCGCGGCGTACAACGGGAATCTA
GTACGTAGAGTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAAGGACCC
ACTTAACGTTTACCTCTTCGCTTTGTTCAATGAGAATCAAAAACAGGGTC
CCACATCGGAAAGGAATTACGGGTTGTTTTATCCCAACGAACAGACGGTG
TACGACTCGCCGTTTGTGTCAACTAGTGGGAACTCAAGCTCAACGCCGGC
AGCCAATAAGAGCAAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTG
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