CF835586

Overview
NameCF835586
Unique NameCF835586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 396
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 84
[Close]
BLAST of CF835586 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:  157 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTG 396
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + +  + E +FVV+M+TK K   G
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNFVVVMVTKAKAGQG 84
The following BLAST results are available for this feature:
BLAST of CF835586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23A_BOVIN2.730e-1242.50UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RD23A_MOUSE7.942e-1242.50UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835586 ID=CF835586; Name=CF835586; organism=Citrus sinensis; type=EST; length=845bp
CTTCTGTATGCTTCTTAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTAT
CAATTATAGATAGACATTGAAAACACCTTGCGGATCGGAAAACCAAATAA
AATAGTTGAATTCGAGAAGACCCAACGGAACGTAGAAAAAGAAGAAGATG
ATGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGT
GAAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTGTTC
AAGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAGGGG
AAAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGTAGCTGAAAA
TAGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAACTGGTGAAG
GTTCAACTAGGTCAACTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCA
ACCCCTGCAGCAACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTC
TACAGAGCCTACACCTGCTCCTGCACCTGCTCCTACTCCTGCTCCTGCTT
CTGCTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGG
CATGCTGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCA
GCAGATTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTC
GTGCTCTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTA
TATTCTGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCC
TGGTAATGGACAAGCTGCTAACTCTCAAACTCAGATGCCACAGCC
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