CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ANAVT (Protein recA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=recA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P++ AEF+IIFG+GVS LGC++D AE   I++RKGAWYSY    + QGRD A++YL + P   E+I++ VR  +  G+V   + +   +  ++E+  L+E
Sbjct:  257 PFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAEQIKQQVREKLDKGAVVSANSVAKANEEDEEDVDLDE 356          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROMT (Protein recA OS=Prochlorococcus marinus (strain NATL2A) GN=recA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLR 316
            P++ AEF+I+FG+G+S LGC+LD A+  ++V RKGAWYSY    +GQGRD  + +L  NP  +E IEK+V+  +++GS    + +R
Sbjct:  270 PFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDNTITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMR 355          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROMM (Protein recA OS=Prochlorococcus marinus (strain MIT 9313) GN=recA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S LGC+LD AE   +V+RKGAWYSY    +GQGRD  + +L  N   QE+IE +VR  +++GS
Sbjct:  272 PFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTITWLEQNSEAQEQIEVLVRQKLTEGS 349          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM3 (Protein recA OS=Prochlorococcus marinus (strain MIT 9303) GN=recA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S LGC+LD AE   +V+RKGAWYSY    +GQGRD  + +L  N   QE+IE +VR  +++GS
Sbjct:  272 PFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTITWLEQNSEAQEQIEVLVRQKLTEGS 349          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM1 (Protein recA OS=Prochlorococcus marinus (strain NATL1A) GN=recA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLR 316
            P++ AEF+I+FG+G+S LGC+LD A+  ++V RKGAWYSY    +GQGRD  + +L  NP  +E IEK+V+  +++GS    + +R
Sbjct:  270 PFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGRDNTITWLEQNPESKEIIEKLVKEKLTEGSEVSANSMR 355          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNSC (Protein recA OS=Synechococcus sp. (strain CC9605) GN=recA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLR 316
            P++ AEF+I+FG G+S LGC+LD AE   +VVRKGAWYSY    +GQGRD  + ++ +NP     IE +VR  +++GS  + + +R
Sbjct:  265 PFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTISWMEENPDATATIETLVRQKLTEGSEVKANSMR 350          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNY3 (Protein recA OS=Synechocystis sp. (strain PCC 6803) GN=recA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P++ AEF+IIFG+G+S++GC +D AE  +++ RKGAWYSY  + + QGRD A++YL +NP +   I++ VR  +S         L N   P + E+  EE
Sbjct:  257 PFRIAEFDIIFGQGISRMGCTIDLAEKCEVITRKGAWYSYNGENIAQGRDNAMKYLEENPEIAATIDQQVREKLS---------LVNAVFPVETEDGAEE 347          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNPW (Protein recA OS=Synechococcus sp. (strain WH7803) GN=recA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S LGC+LD AE   +V RKGAWYSY    +GQGRD  + +L  NP  ++ IE +VR  +++GS
Sbjct:  267 PFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIGWLEQNPEAKDTIETLVRQKLTEGS 344          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_THEEB (Protein recA OS=Thermosynechococcus elongatus (strain BP-1) GN=recA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P++ AEF+IIFG+G++ LGC+LD AE + ++ RKGAWYSY  + L QGRD  + Y+ +NP   +EIE+ VR
Sbjct:  260 PFRIAEFDIIFGKGIANLGCILDMAEEVGVITRKGAWYSYNGENLAQGRDNTINYMEENPSFAQEIEQQVR 330          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNPX (Protein recA OS=Synechococcus sp. (strain WH8102) GN=recA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S LGC+LD AE   +V+RKGAWYSY    +GQGRD  + ++ +NP     IE++VR  +++GS
Sbjct:  267 PFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTITWMEENPEAAITIEQLVRQKLTEGS 344          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_ANAVT7.865e-1943.00Protein recA OS=Anabaena variabilis (strain ATCC 2... [more]
RECA_PROMT2.288e-1846.51Protein recA OS=Prochlorococcus marinus (strain NA... [more]
RECA_PROMM2.288e-1851.28Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_PROM32.288e-1851.28Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_PROM12.288e-1846.51Protein recA OS=Prochlorococcus marinus (strain NA... [more]
RECA_SYNSC5.098e-1846.51Protein recA OS=Synechococcus sp. (strain CC9605) ... [more]
RECA_SYNY36.658e-1842.00Protein recA OS=Synechocystis sp. (strain PCC 6803... [more]
RECA_SYNPW8.696e-1850.00Protein recA OS=Synechococcus sp. (strain WH7803) ... [more]
RECA_THEEB1.136e-1752.11Protein recA OS=Thermosynechococcus elongatus (str... [more]
RECA_SYNPX1.136e-1748.72Protein recA OS=Synechococcus sp. (strain WH8102) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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