CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_TRIEI (Protein recA OS=Trichodesmium erythraeum (strain IMS101) GN=recA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEEN 346
            P++ AEF+IIFG+G+S +GC++D AE  D++ RKGAWYSY      QGR+KA+ Y+  N    ++IEK VR  +S G++   + +  V    ++E+
Sbjct:  257 PFRVAEFDIIFGKGISNVGCIIDLAEETDVIKRKGAWYSYQGSNFAQGREKAIAYMESNIDFAKKIEKQVRDHLSQGALVSANSVARVDEIEEDED 352          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNS3 (Protein recA OS=Synechococcus sp. (strain CC9311) GN=recA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S LGC+LD AE   +V RKGAWYSY    +GQGRD  + +L  NP  ++ IE +VR  +++GS
Sbjct:  267 PFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIGWLEQNPEAKDAIEVLVRQKLTEGS 344          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CYAP7 (Protein recA OS=Cyanothece sp. (strain PCC 7424) GN=recA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P++ AEF+IIFG+G+S++GCM+D AE  D++ RKGAWYSY  + + QGRD A++YL +N  +   IEK VR  +   S+
Sbjct:  258 PFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGENIAQGRDNAVKYLEENLDVAAIIEKQVREKLDIASL 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BACHD (Protein recA OS=Bacillus halodurans GN=recA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQAE +I++GEG+S+ G +LD A  +DIV + GAWYS+ D+RLGQGR+ A Q+L++NP   EEIE  +R
Sbjct:  252 PFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGRENAKQFLKENPEAAEEIESRIR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHORT (Protein recA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=recA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+K  EF+I++GEG+SKLG MLD     +I+ + GAW+SY   R+GQGR+ A Q+LRDNP + EEIE  VR+
Sbjct:  265 PFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTRIGQGRENAKQFLRDNPAMAEEIENAVRA 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHOCA (Protein recA OS=Rhodobacter capsulatus GN=recA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 36/72 (50.00%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+++ EF+I++GEG+SK+G ++D      +V + GAWYSYGD+R+GQGR+ A Q+LRDNP +  EIE  +R+
Sbjct:  266 PFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYGDERIGQGRENAKQFLRDNPDIAYEIEDKIRA 337          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CLOD6 (Protein recA OS=Clostridium difficile (strain 630) GN=recA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P+KQAEF+I++GEG+SK+G +LD A  +DIV + G+WYSY D +LGQGR+   ++L DN  L  EI++ VR+  +    H+ S
Sbjct:  255 PFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEIDEKVRAFYNLNEEHEES 337          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNS9 (Protein recA OS=Synechococcus sp. (strain CC9902) GN=recA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG G+S +GC+LD AE   +VVRKGAWYSY    +GQGRD  + ++  NP     IE +VR  +++G+
Sbjct:  267 PFRIAEFDILFGRGISTVGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTIVWMEQNPEAATTIETLVRQKLNEGT 344          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROMP (Protein recA OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=recA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 37/96 (38.54%), Postives = 67/96 (69.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEEN 346
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  ++ ++E +V++ +++G+    + ++  +L N  EN
Sbjct:  266 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIKNKVESIVKTKLTEGTEVSSNSMK--ALNNNPEN 359          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_DESPS (Protein recA OS=Desulfotalea psychrophila GN=recA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P+K AEF+II+GEG+SK+G M D A  +DI+ + G+WYSY ++R+GQGR+ + Q+L D P +  EIE+ VRS                 LP++EE   EE
Sbjct:  257 PFKIAEFDIIYGEGISKIGDMFDLAVGLDIIDKSGSWYSYKNERIGQGRENSKQFLMDTPAICHEIEEKVRSA--------------YGLPDREETKREE 342          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_TRIEI1.483e-1741.67Protein recA OS=Trichodesmium erythraeum (strain I... [more]
RECA_SYNS31.483e-1750.00Protein recA OS=Synechococcus sp. (strain CC9311) ... [more]
RECA_CYAP71.937e-1749.37Protein recA OS=Cyanothece sp. (strain PCC 7424) G... [more]
RECA_BACHD1.937e-1754.93Protein recA OS=Bacillus halodurans GN=recA PE=3 S... [more]
RECA_RHORT2.530e-1754.17Protein recA OS=Rhodospirillum rubrum (strain ATCC... [more]
RECA_RHOCA4.316e-1750.00Protein recA OS=Rhodobacter capsulatus GN=recA PE=... [more]
RECA_CLOD67.361e-1748.19Protein recA OS=Clostridium difficile (strain 630)... [more]
RECA_SYNS99.614e-1747.44Protein recA OS=Synechococcus sp. (strain CC9902) ... [more]
RECA_PROMP9.614e-1738.54Protein recA OS=Prochlorococcus marinus subsp. pas... [more]
RECA_DESPS1.256e-1644.00Protein recA OS=Desulfotalea psychrophila GN=recA ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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