CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ARCB4 (Protein recA OS=Arcobacter butzleri (strain RM4018) GN=recA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIE-KVVRSM 277
            P+KQAEF+I+FGEG+SK G ++D    +DIV + GAW+SYGD ++GQGR+ +  +L+DNP +  EIE K++ SM
Sbjct:  254 PFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLKDNPEVAREIENKILESM 327          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNP2 (Protein recA OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=recA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQG 304
            P++ AEF+IIFG+G+S++GCMLD AE   ++ RKGAWYSY    + QGRD A++YL +NP +   + + VR  +   S+  G
Sbjct:  258 PFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNIAQGRDNAVKYLEENPDVAAIVTQKVRENLDMSSMGFG 339          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM5 (Protein recA OS=Prochlorococcus marinus (strain MIT 9515) GN=recA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 34/78 (43.59%), Postives = 60/78 (76.92%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  +++++E +V+S +++G+
Sbjct:  266 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIKKKVEGIVKSKLTEGT 343          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PARL1 (Protein recA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=recA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+KQ EF+I++GEG+SK+G ++D      IV + G+W+SY  QR+GQGR+ A Q+LRDNP +  EIE  +R+
Sbjct:  264 PFKQVEFDIMYGEGISKMGELVDLGSKAGIVEKSGSWFSYNSQRIGQGRENAKQFLRDNPEMAAEIEAAIRA 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_THETN (Protein recA OS=Thermoanaerobacter tengcongensis GN=recA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQAEF+I++GEG+S+ G +LD    +DI+ + G+WYSY D +LGQGR+ A Q+L++N  + EEIE+ +R
Sbjct:  253 PFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQGRENAKQFLKENKEIAEEIERKIR 323          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_HERA2 (Protein recA OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=recA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 36/72 (50.00%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P++QAEF+I++ EG+S+ G ++D    M+I+ + GAW+  GD RLGQGR+ A Q+L+DNP L +EIEK++R+
Sbjct:  254 PFRQAEFDIMYNEGISREGNIVDVGVTMEILRKSGAWFYLGDDRLGQGRENAKQFLKDNPALADEIEKMIRA 325          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMHC (Protein recA OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=recA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P+K AEF+I+FGEG+SK+G ++D    +DIV + G+W+SY D++LGQGR+ A  YL++NP + +EI   +R  M   S+   S
Sbjct:  254 PFKVAEFDIMFGEGISKMGELVDYGVKLDIVDKSGSWFSYKDKKLGQGRENAKIYLKENPKVADEILAAIREQMGSESLSSSS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SULNB (Protein recA OS=Sulfurovum sp. (strain NBC37-1) GN=recA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDG 289
            P++QAEF+I+FGEG+S +G ++D    MDIV + GAW+SYG ++LGQG++ A   L++NP L+EEIE  V+  +  G
Sbjct:  256 PFRQAEFDIMFGEGISYIGELIDYGIKMDIVDKSGAWFSYGAEKLGQGKENAKLTLKENPKLREEIEMQVKEALGFG 332          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICBR (Protein recA OS=Rickettsia bellii (strain RML369-C) GN=recA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DI+ + G+W+SY   R+GQGR+   QYL+DNP +  EIEK+VR         + S + N++   +EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRIGQGRENVKQYLKDNPKISNEIEKLVR--------EKSSKVTNINFEQEEE 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICB8 (Protein recA OS=Rickettsia bellii (strain OSU 85-389) GN=recA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DI+ + G+W+SY   R+GQGR+   QYL+DNP +  EIEK+VR         + S + N++   +EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRIGQGRENVKQYLKDNPKISNEIEKLVR--------EKSSKVTNINFEQEEE 340          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_ARCB41.256e-1652.70Protein recA OS=Arcobacter butzleri (strain RM4018... [more]
RECA_SYNP21.640e-1646.34Protein recA OS=Synechococcus sp. (strain ATCC 272... [more]
RECA_PROM51.640e-1643.59Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_PARL11.640e-1650.00Protein recA OS=Parvibaculum lavamentivorans (stra... [more]
RECA_THETN2.142e-1650.70Protein recA OS=Thermoanaerobacter tengcongensis G... [more]
RECA_HERA22.142e-1650.00Protein recA OS=Herpetosiphon aurantiacus (strain ... [more]
RECA_CAMHC2.142e-1645.78Protein recA OS=Campylobacter hominis (strain ATCC... [more]
RECA_SULNB3.653e-1649.35Protein recA OS=Sulfurovum sp. (strain NBC37-1) GN... [more]
RECA_RICBR4.772e-1640.00Protein recA OS=Rickettsia bellii (strain RML369-C... [more]
RECA_RICB84.772e-1640.00Protein recA OS=Rickettsia bellii (strain OSU 85-3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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