CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNP6 (Protein recA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 34/78 (43.59%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S LGC++D AE   +++RKGAWYSY    +GQGRD  + +L ++P  +  +E+ VR  ++ G+
Sbjct:  259 PFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITHLEEHPDFRATVEQQVREKLALGA 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNE7 (Protein recA OS=Synechococcus elongatus (strain PCC 7942) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 34/78 (43.59%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S LGC++D AE   +++RKGAWYSY    +GQGRD  + +L ++P  +  +E+ VR  ++ G+
Sbjct:  259 PFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGRDNTITHLEEHPDFRATVEQQVREKLALGA 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROMS (Protein recA OS=Prochlorococcus marinus (strain AS9601) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  ++ ++E +V+  +++G+
Sbjct:  261 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKLTEGT 338          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM9 (Protein recA OS=Prochlorococcus marinus (strain MIT 9312) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  ++ ++E +V+  +++G+
Sbjct:  261 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKLTEGT 338          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM0 (Protein recA OS=Prochlorococcus marinus (strain MIT 9301) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 33/78 (42.31%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  ++ ++E +V+  +++G+
Sbjct:  261 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIRNKVESMVKEKLTEGT 338          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BACSK (Protein recA OS=Bacillus clausii (strain KSM-K16) GN=recA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P++ AE +I++GEG+S+ G MLD A  +DIV + GAWYSY   RLGQGR+ + Q+L++NP +  EIE+++R
Sbjct:  252 PFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYKGDRLGQGRENSKQFLKENPEITAEIERLIR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SINMW (Protein recA OS=Sinorhizobium medicae (strain WSM419) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFLRDNPELLREIETALR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PROM2 (Protein recA OS=Prochlorococcus marinus (strain MIT 9215) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 32/78 (41.03%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P++ AEF+I+FG+G+S  GC+LD AE  +I++R+GAWYSY  + +GQGRD  + +L  N  ++ ++E +++  +++G+
Sbjct:  261 PFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNLEIKNKVESMIKEKLTEGT 338          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_METS4 (Protein recA OS=Methylobacterium sp. (strain 4-46) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 280
            P+KQ EF+I+FGEGVSK+G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP +   IE  +R  M
Sbjct:  267 PFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGRENAKGFLRDNPDIAGRIEAAIRQNM 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_METRJ (Protein recA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I+FGEGVSK+G ++D      IV + GAW+SY  QRLGQGR+ +  +LRDNP +  EIE  +R
Sbjct:  267 PFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRENSKGFLRDNPKIAAEIEGSIR 337          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_SYNP66.232e-1643.59Protein recA OS=Synechococcus sp. (strain ATCC 271... [more]
RECA_SYNE76.232e-1643.59Protein recA OS=Synechococcus elongatus (strain PC... [more]
RECA_PROMS6.232e-1642.31Protein recA OS=Prochlorococcus marinus (strain AS... [more]
RECA_PROM96.232e-1642.31Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_PROM06.232e-1642.31Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_BACSK6.232e-1650.70Protein recA OS=Bacillus clausii (strain KSM-K16) ... [more]
RECA_SINMW8.139e-1654.93Protein recA OS=Sinorhizobium medicae (strain WSM4... [more]
RECA_PROM28.139e-1641.03Protein recA OS=Prochlorococcus marinus (strain MI... [more]
RECA_METS48.139e-1652.70Protein recA OS=Methylobacterium sp. (strain 4-46)... [more]
RECA_METRJ8.139e-1653.52Protein recA OS=Methylobacterium radiotolerans (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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