CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_STRPC (Protein recA OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE EI++GEG+S+ G ++  A  +DI+ + GAW+SY  +++GQG + A +YL ++P L +EI++ VR
Sbjct:  271 PFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLAEHPELFDEIDRKVR 341          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_STRPB (Protein recA OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE EI++GEG+S+ G ++  A  +DI+ + GAW+SY  +++GQG + A +YL ++P L +EI++ VR
Sbjct:  271 PFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLAEHPELFDEIDRKVR 341          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_STRP8 (Protein recA OS=Streptococcus pyogenes serotype M18 GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE EI++GEG+S+ G ++  A  +DI+ + GAW+SY  +++GQG + A +YL ++P L +EI++ VR
Sbjct:  271 PFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLAEHPELFDEIDRKVR 341          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_STRP6 (Protein recA OS=Streptococcus pyogenes serotype M6 GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE EI++GEG+S+ G ++  A  +DI+ + GAW+SY  +++GQG + A +YL ++P L +EI++ VR
Sbjct:  271 PFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLAEHPELFDEIDRKVR 341          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_STRP1 (Protein recA OS=Streptococcus pyogenes serotype M1 GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE EI++GEG+S+ G ++  A  +DI+ + GAW+SY  +++GQG + A +YL D+P L +EI+  VR
Sbjct:  271 PFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEIDLKVR 341          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PSEPW (Protein recA OS=Pseudomonas putida (strain W619) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 30/79 (37.97%), Postives = 52/79 (65.82%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P++QAEF+I++G+G+ + G ++D      +V + GAWY+Y   ++GQG+  A +YL++NP +  EIEK +R  +    V
Sbjct:  253 PFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLQENPAIGAEIEKQIREKLLKAGV 331          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PSEPU (Protein recA OS=Pseudomonas putida GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 31/80 (38.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR-SMMSDGSV 295
            P++QAEF+I++G+G+ + G ++D      +V + GAWY+Y   ++GQG+  A +YL +NP +  EIEK +R  +++ G+V
Sbjct:  253 PFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEKQIRDKLLTSGAV 332          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_NOCFA (Protein recA OS=Nocardia farcinica GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 29/78 (37.18%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P+KQAEF+I++G+G+SK G ++D       + + G+WY+Y   +LGQG++ A ++L +N  +++EIEK ++  +  G+
Sbjct:  256 PFKQAEFDILYGQGISKEGSLIDMGVEQGFIRKSGSWYTYEGDQLGQGKENARKFLLENTDVRDEIEKKIKEKLGIGA 333          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_IDILO (Protein recA OS=Idiomarina loihiensis GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 28/74 (37.84%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 280
            P+K+A F+I++G+G+SK G ++D      +V + GAWYSY   ++GQG+  ++++L+DNP + +E+E  +R ++
Sbjct:  253 PFKEAHFQILYGKGISKEGELIDLGVKHKMVDKAGAWYSYNGDKIGQGKANSMKFLQDNPKIADELEGRIRELL 326          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BACSU (Protein recA OS=Bacillus subtilis GN=recA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 32/72 (44.44%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNP----LLQEEIEK 262
            P++ AE +I++GEG+SK G ++D    +DIV + G+WYSY ++RLGQGR+ A Q+L++N     ++QE+I +
Sbjct:  252 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQIRE 323          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_STRPC1.437e-1243.66Protein recA OS=Streptococcus pyogenes serotype M1... [more]
RECA_STRPB1.437e-1243.66Protein recA OS=Streptococcus pyogenes serotype M1... [more]
RECA_STRP81.437e-1243.66Protein recA OS=Streptococcus pyogenes serotype M1... [more]
RECA_STRP61.437e-1243.66Protein recA OS=Streptococcus pyogenes serotype M6... [more]
RECA_STRP11.437e-1245.07Protein recA OS=Streptococcus pyogenes serotype M1... [more]
RECA_PSEPW1.437e-1237.97Protein recA OS=Pseudomonas putida (strain W619) G... [more]
RECA_PSEPU1.437e-1238.75Protein recA OS=Pseudomonas putida GN=recA PE=3 SV... [more]
RECA_NOCFA1.437e-1237.18Protein recA OS=Nocardia farcinica GN=recA PE=3 SV... [more]
RECA_IDILO1.437e-1237.84Protein recA OS=Idiomarina loihiensis GN=recA PE=3... [more]
RECA_BACSU1.437e-1244.44Protein recA OS=Bacillus subtilis GN=recA PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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