CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_MYCGI (Protein recA OS=Mycobacterium gilvum (strain PYR-GCK) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 28/78 (35.90%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P+KQAEF+I++G+G+S+ G ++D       + + G+W++Y  ++LGQG++ A  +L  NP +  EIEK ++  +  G+
Sbjct:  256 PFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQGKENARNFLLQNPDVGNEIEKKIKEKLGIGA 333          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_MYCA9 (Protein recA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 29/79 (36.71%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P+KQAEF+I++G+G+SK G ++D       + + G+W++Y  ++LGQG++ A  +L +N  +  EIEK ++  +  G+V
Sbjct:  255 PFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVANEIEKKIKEKLGIGAV 333          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_HAEDU (Protein recA OS=Haemophilus ducreyi GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 25/74 (33.78%), Postives = 56/74 (75.68%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 280
            P+++ +F+I++GEG++++  +L  AE    + + GAW+SY   ++GQG++ A+++L++NP + E+IE+ +R+++
Sbjct:  269 PFREVQFDIMYGEGIARMNELLILAEANGFIQKAGAWFSYNGTKIGQGKNNAIKWLKENPEVAEKIEQEIRNLL 342          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CHLTR (Protein recA OS=Chlamydia trachomatis GN=recA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 262
            P++ AEF+I+F EG+S  GC++D A   +I+ +KG+W++Y D++LGQGR+   + L+ N  L  E+E+
Sbjct:  256 PFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKLGQGREAVREELKRNKELFHELER 323          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CHLTB (Protein recA OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 262
            P++ AEF+I+F EG+S  GC++D A   +I+ +KG+W++Y D++LGQGR+   + L+ N  L  E+E+
Sbjct:  256 PFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKLGQGREAVREELKRNKELFHELER 323          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CHLT2 (Protein recA OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEK 262
            P++ AEF+I+F EG+S  GC++D A   +I+ +KG+W++Y D++LGQGR+   + L+ N  L  E+E+
Sbjct:  256 PFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKLGQGREAVREELKRNKELFHELER 323          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CHLP8 (Protein recA OS=Chlorobaculum parvum (strain NCIB 8327) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 30/75 (40.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS 283
            P+K AEF+I++GEG+S LG ++D A    I+ + GAW+SYG ++LGQGR+   + L+++  ++  I + VR  ++
Sbjct:  268 PFKIAEFDILYGEGISVLGELIDLAVEFGIIKKAGAWFSYGSEKLGQGRENVKRLLKEDETVRNTIRQQVRDTLT 342          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ARTS2 (Protein recA OS=Arthrobacter sp. (strain FB24) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 28/77 (36.36%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDG 289
            P+K AEF+II+G+G+S+ G ++D      ++ + G+W++Y   +LGQG + + ++LRDNP L  E+E++++  +  G
Sbjct:  255 PFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQGMENSRRFLRDNPELAAELERLIKEKLGVG 331          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ALTMD (Protein recA OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=recA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEENILEE 358
            P+KQAEF I +GEG+SK   ++D      +V + GAWYSY   R+GQG+   ++YL+++P    EIE  +R  +    +   +     +LP  E+++L E
Sbjct:  253 PFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGKANVMKYLKEHPETANEIETKIRQEL----LLSKTVKAEEALPQGEDDVLPE 348          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHOSR (Protein recA OS=Rhodococcus sp. (strain RHA1) GN=recA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 29/78 (37.18%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGS 292
            P+KQAEF+I++G G+SK G ++D       + + G+WY+Y   +LGQG++ A ++L +N  +++EIEK ++  +  G+
Sbjct:  256 PFKQAEFDILYGLGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGKENARKFLLENTDIRDEIEKKIKEKLGIGA 333          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_MYCGI5.459e-1235.90Protein recA OS=Mycobacterium gilvum (strain PYR-G... [more]
RECA_MYCA95.459e-1236.71Protein recA OS=Mycobacterium abscessus (strain AT... [more]
RECA_HAEDU5.459e-1233.78Protein recA OS=Haemophilus ducreyi GN=recA PE=3 S... [more]
RECA_CHLTR5.459e-1242.65Protein recA OS=Chlamydia trachomatis GN=recA PE=3... [more]
RECA_CHLTB5.459e-1242.65Protein recA OS=Chlamydia trachomatis (strain L2b/... [more]
RECA_CHLT25.459e-1242.65Protein recA OS=Chlamydia trachomatis (strain L2/4... [more]
RECA_CHLP85.459e-1240.00Protein recA OS=Chlorobaculum parvum (strain NCIB ... [more]
RECA_ARTS25.459e-1236.36Protein recA OS=Arthrobacter sp. (strain FB24) GN=... [more]
RECA_ALTMD5.459e-1236.00Protein recA OS=Alteromonas macleodii (strain DSM ... [more]
RECA_RHOSR7.130e-1237.18Protein recA OS=Rhodococcus sp. (strain RHA1) GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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