CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_METNO (Protein recA OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMM 280
            P+KQ EF+I+FGEGVSK+G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP +   IE  +R  M
Sbjct:  267 PFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGRENAKGFLRDNPDIAGRIEAAIRQNM 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_EXIS2 (Protein recA OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 34/71 (47.89%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQAE +I++G+G+SK G ++D    +DIV + GAWYSY  +RLGQGR+ A QY+ ++P + +E+E+++R
Sbjct:  252 PFKQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENAKQYMIEHPDVADEVERLIR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CLOPE (Protein recA OS=Clostridium perfringens GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS 283
            P+KQAEF+I++ EG+SK G ++D     +IV + GAW+SYGD RLGQGR+ A QYL++NP +  +IE  +R   S
Sbjct:  256 PFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALDIENQIREKYS 330          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CLOP1 (Protein recA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS 283
            P+KQAEF+I++ EG+SK G ++D     +IV + GAW+SYGD RLGQGR+ A QYL++NP +  +IE  +R   S
Sbjct:  256 PFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALDIENQIREKYS 330          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUSU (Protein recA OS=Brucella suis GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUSI (Protein recA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUME (Protein recA OS=Brucella melitensis GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUMB (Protein recA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUC2 (Protein recA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUAB (Protein recA OS=Brucella abortus GN=recA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_METNO8.139e-1652.70Protein recA OS=Methylobacterium nodulans (strain ... [more]
RECA_EXIS28.139e-1647.89Protein recA OS=Exiguobacterium sibiricum (strain ... [more]
RECA_CLOPE8.139e-1650.67Protein recA OS=Clostridium perfringens GN=recA PE... [more]
RECA_CLOP18.139e-1650.67Protein recA OS=Clostridium perfringens (strain AT... [more]
RECA_BRUSU8.139e-1652.11Protein recA OS=Brucella suis GN=recA PE=3 SV=1[more]
RECA_BRUSI8.139e-1652.11Protein recA OS=Brucella suis (strain ATCC 23445 /... [more]
RECA_BRUME8.139e-1652.11Protein recA OS=Brucella melitensis GN=recA PE=3 S... [more]
RECA_BRUMB8.139e-1652.11Protein recA OS=Brucella melitensis biotype 2 (str... [more]
RECA_BRUC28.139e-1652.11Protein recA OS=Brucella canis (strain ATCC 23365 ... [more]
RECA_BRUAB8.139e-1652.11Protein recA OS=Brucella abortus GN=recA PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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