CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUA2 (Protein recA OS=Brucella abortus (strain 2308) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BRUA1 (Protein recA OS=Brucella abortus (strain S19) GN=recA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK+G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ROSS1 (Protein recA OS=Roseiflexus sp. (strain RS-1) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P++QAEF+I+  EG+S+ G +LD    +DI+ + GAW+  GD RLGQGR+ A Q+L +NP L +EIE+++R+
Sbjct:  256 PFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGDDRLGQGRENAKQFLNENPALADEIERLIRA 327          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHISN (Protein recA OS=Rhizobium sp. (strain NGR234) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFLRDNPDLLREIEMALR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHIEC (Protein recA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELALR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHIE6 (Protein recA OS=Rhizobium etli (strain CIAT 652) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELALR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_PARDE (Protein recA OS=Paracoccus denitrificans GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 34/72 (47.22%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P++Q EF+I++GEG+SK+G ++D      +V + G+WYSYGD+R+GQGR+ A Q+LRD+P +   IE  +R+
Sbjct:  266 PFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQFLRDHPDMAHAIEDKIRA 337          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_NITSB (Protein recA OS=Nitratiruptor sp. (strain SB155-2) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS-DGSV 295
            P++QAEF+I+FGEG+SK G ++D    MDI+ + G+W+SY D +LGQGR+ A  YL+++P + +EIE  +R  M  D SV
Sbjct:  254 PFRQAEFDIMFGEGISKEGELIDYGVKMDIIDKSGSWFSYKDIKLGQGRENAKAYLKEHPEVAQEIENEIRRAMGMDDSV 333          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CLOPS (Protein recA OS=Clostridium perfringens (strain SM101 / Type A) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMS 283
            P+KQAEF+I++ EG+SK G ++D     +IV + GAW+SYGD RLGQGR+ A QYL++NP +  +IE  +R   S
Sbjct:  256 PFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPSVALDIENQIREKYS 330          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_AGRVS (Protein recA OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=recA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP + +EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQRLGQGRENAKIFLRDNPAVADEIETALR 335          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_BRUA28.139e-1652.11Protein recA OS=Brucella abortus (strain 2308) GN=... [more]
RECA_BRUA18.139e-1652.11Protein recA OS=Brucella abortus (strain S19) GN=r... [more]
RECA_ROSS11.063e-1548.61Protein recA OS=Roseiflexus sp. (strain RS-1) GN=r... [more]
RECA_RHISN1.063e-1554.93Protein recA OS=Rhizobium sp. (strain NGR234) GN=r... [more]
RECA_RHIEC1.063e-1554.93Protein recA OS=Rhizobium etli (strain CFN 42 / AT... [more]
RECA_RHIE61.063e-1554.93Protein recA OS=Rhizobium etli (strain CIAT 652) G... [more]
RECA_PARDE1.063e-1547.22Protein recA OS=Paracoccus denitrificans GN=recA P... [more]
RECA_NITSB1.063e-1548.75Protein recA OS=Nitratiruptor sp. (strain SB155-2)... [more]
RECA_CLOPS1.063e-1550.67Protein recA OS=Clostridium perfringens (strain SM... [more]
RECA_AGRVS1.063e-1553.52Protein recA OS=Agrobacterium vitis (strain S4 / A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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