CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICFE (Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DIV + G+W+SY + R+GQGR+   QYL+++P +  EIEK++R         + S + N++L   EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRIGQGRENVKQYLKEHPQISNEIEKIIR--------EKSSKITNINLDQTEE 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_OCHA4 (Protein recA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++G GVSK G ++D      +V + GAW+SY  QRLGQGR+ A QYL+DNP +  EIE  +R
Sbjct:  265 PFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYLKDNPEVAREIETTLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_LARHH (Protein recA OS=Laribacter hongkongensis (strain HLHK9) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 34/81 (41.98%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQ 301
            P+KQAEF+I++GEG+S+ G +++       V + GAWY+Y  Q++GQG+D A ++LR+NP + +EIEK +R+    G +++
Sbjct:  255 PFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKIGQGKDNAREWLRENPAIAQEIEKKIRTAAGVGGMNE 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMJR (Protein recA OS=Campylobacter jejuni (strain RM1221) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQGR+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:  254 PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMJJ (Protein recA OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQGR+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:  254 PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMJE (Protein recA OS=Campylobacter jejuni GN=recA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQGR+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:  254 PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMJD (Protein recA OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQGR+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:  254 PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CAMJ8 (Protein recA OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGS 307
            P++QAEF+++FGEG+S+ G ++D    +DIV + GAW+SY D++LGQGR+ +  +L++NP + +EI K +++ M    +  GS
Sbjct:  254 PFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMISGS 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BARBK (Protein recA OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=recA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEEN 346
            P+KQ EF+II+GEG+SKLG ++D    + IV + GAW+SY  QRLGQGR+ A Q+LR++  +  EIE  +R    +  +     L NV   N E +
Sbjct:  252 PFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGAWFSYNSQRLGQGRENAKQFLREHAEIAAEIETALR---QNAGLLAIELLENVGADNIEND 344          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHILW (Protein recA OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLR 335          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_RICFE1.388e-1538.95Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1[more]
RECA_OCHA41.388e-1552.11Protein recA OS=Ochrobactrum anthropi (strain ATCC... [more]
RECA_LARHH1.388e-1541.98Protein recA OS=Laribacter hongkongensis (strain H... [more]
RECA_CAMJR1.388e-1542.17Protein recA OS=Campylobacter jejuni (strain RM122... [more]
RECA_CAMJJ1.388e-1542.17Protein recA OS=Campylobacter jejuni subsp. jejuni... [more]
RECA_CAMJE1.388e-1542.17Protein recA OS=Campylobacter jejuni GN=recA PE=1 ... [more]
RECA_CAMJD1.388e-1542.17Protein recA OS=Campylobacter jejuni subsp. doylei... [more]
RECA_CAMJ81.388e-1542.17Protein recA OS=Campylobacter jejuni subsp. jejuni... [more]
RECA_BARBK1.388e-1543.75Protein recA OS=Bartonella bacilliformis (strain A... [more]
RECA_RHILW1.813e-1554.93Protein recA OS=Rhizobium leguminosarum bv. trifol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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