CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHILV (Protein recA OS=Rhizobium leguminosarum bv. viciae GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  252 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHIL3 (Protein recA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_DICNV (Protein recA OS=Dichelobacter nodosus (strain VCS1703A) GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 35/80 (43.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVH 298
            P+KQAEF+I++G+GVS+ G ++  A   DI+ + GAWYSY D+++GQG++K   YL+++P + +EIE  +R     G +H
Sbjct:  254 PFKQAEFDILYGQGVSREGEIIQLAVNADIMQKSGAWYSYRDEKIGQGKEKVRLYLKEHPDVAQEIETKIREKFIGGELH 333          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BARQU (Protein recA OS=Bartonella quintana GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEEN 346
            P+KQ EF+II+GEG+SKLG ++D    + IV + G+W+SY  QRLGQGR+ A Q+LR++  +  EIE  +R    +  +     L N    N E N
Sbjct:  252 PFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQGRENAKQFLREHAEIATEIETALR---QNAGLIAIELLENAGSENTESN 344          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BARHE (Protein recA OS=Bartonella henselae GN=recA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+II+GEG+SKLG ++D    +  V + G+W+SY  QRLGQGR+ A Q+LR++P +  EIE  +R
Sbjct:  252 PFKQVEFDIIYGEGISKLGELIDLGVKVGTVEKSGSWFSYNSQRLGQGRENAKQFLREHPEIATEIETALR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYMTH (Protein recA OS=Symbiobacterium thermophilum GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 35/81 (43.21%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMD--IVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSV 295
            P+KQAEF+I++G+G+SK G ++D    ++  ++V+ GAWYSYGD R+GQG+D A  +LR +P +  EIE+ ++  ++  S+
Sbjct:  256 PFKQAEFDILYGQGISKEGSLIDIGTELNPPVIVKSGAWYSYGDLRIGQGKDNARDWLRQHPEVAAEIEQKIKERLNVASL 336          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICPU (Protein recA OS=Rickettsia peacockii (strain Rustic) GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DIV + G+W+SY + R+GQGR+   QYL+++P +  EIEK++R         + S + N++L   EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIEKIIR--------EKSSKITNINLDQTEE 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICCN (Protein recA OS=Rickettsia conorii GN=recA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DIV + G+W+SY + R+GQGR+   QYL+++P +  EIEK++R         + S + N++L   EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIEKIIR--------EKSSKITNINLDQTEE 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICCK (Protein recA OS=Rickettsia canadensis (strain McKiel) GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DIV + G+W+SY + R+GQGR+   QYL+++P +  EIEK++R         + S + N++L   EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRIGQGRENVKQYLKEHPQIANEIEKIIR--------EKSSKITNMNLDQMEE 340          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RICAE (Protein recA OS=Rickettsia africae (strain ESF-5) GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSMMSDGSVHQGSFLRNVSLPNQEE 343
            P+K A+F+I++G G+SK G ++D    +DIV + G+W+SY + R+GQGR+   QYL+++P +  EIEK++R         + S + N++L   EE
Sbjct:  254 PFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIEKIIR--------EKSSKITNINLDQTEE 340          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_RHILV1.813e-1554.93Protein recA OS=Rhizobium leguminosarum bv. viciae... [more]
RECA_RHIL31.813e-1554.93Protein recA OS=Rhizobium leguminosarum bv. viciae... [more]
RECA_DICNV1.813e-1543.75Protein recA OS=Dichelobacter nodosus (strain VCS1... [more]
RECA_BARQU1.813e-1542.71Protein recA OS=Bartonella quintana GN=recA PE=3 S... [more]
RECA_BARHE1.813e-1550.70Protein recA OS=Bartonella henselae GN=recA PE=3 S... [more]
RECA_SYMTH2.368e-1543.21Protein recA OS=Symbiobacterium thermophilum GN=re... [more]
RECA_RICPU2.368e-1538.95Protein recA OS=Rickettsia peacockii (strain Rusti... [more]
RECA_RICCN2.368e-1538.95Protein recA OS=Rickettsia conorii GN=recA PE=3 SV... [more]
RECA_RICCK2.368e-1538.95Protein recA OS=Rickettsia canadensis (strain McKi... [more]
RECA_RICAE2.368e-1538.95Protein recA OS=Rickettsia africae (strain ESF-5) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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