CF835635

Overview
NameCF835635
Unique NameCF835635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_RHIME (Protein recA OS=Rhizobium meliloti GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LR+NP L  EIE  +R
Sbjct:  252 PFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFLRENPELLREIETALR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_EXISA (Protein recA OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+K AE +I++GEG+S+ G ++D    +DIV + GAWYS+ ++RLGQGR+ A QY+++NP +  E+E+ +R
Sbjct:  252 PFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQGRENAKQYMKENPAIAAEVEQQIR 322          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BIFLO (Protein recA OS=Bifidobacterium longum GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 32/72 (44.44%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+K AEF++++GEG+S+ G ++D A+ + +V + G+W++Y   +LGQGR+K  Q+L+DNP + EEIE  V++
Sbjct:  271 PFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGREKVRQFLKDNPAITEEIENKVKA 342          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_BIFBR (Protein recA OS=Bifidobacterium breve GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 32/72 (44.44%), Postives = 55/72 (76.39%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+K AEF++++GEG+S+ G ++D A+ + +V + G+W++Y   +LGQGR+K  Q+L+DNP + EEIE  V++
Sbjct:  271 PFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGREKVRQFLKDNPAITEEIENKVKA 342          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_AQUPY (Protein recA OS=Aquifex pyrophilus GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 32/73 (43.84%), Postives = 58/73 (79.45%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRSM 277
            P+++AEF++I+GEG+ ++  ++D A  + ++ + G+WYSYG++RLGQGR++A +YL ++P + EEIE+ VR +
Sbjct:  259 PFQEAEFDVIYGEGICRICDIIDTAANLGVITKSGSWYSYGEKRLGQGREQAKKYLLEHPEMLEEIERKVREV 331          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_AGRRK (Protein recA OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=recA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQ EF+I++GEGVSK G ++D      IV + GAW+SY  QRLGQGR+ A  +LRDNP L  EIE  +R
Sbjct:  265 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKLFLRDNPDLAREIELSLR 335          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_ROSCS (Protein recA OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=recA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 34/72 (47.22%), Postives = 54/72 (75.00%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P++QAEF+I+  EG+S+ G +LD    +DI+ + GAW+  G+ RLGQGR+ A Q+L +NP L +EIE+++R+
Sbjct:  256 PFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGEDRLGQGRENAKQFLNENPALADEIERLIRA 327          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_CLOBB (Protein recA OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=recA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQAEF+I++ EG+S+ G ++D     +IV + GAW+SYGD RLGQGR+ A QYL++NP +  +IE  +R
Sbjct:  256 PFKQAEFDIMYNEGISRQGNIVDVGVKEEIVQKSGAWFSYGDIRLGQGRENAKQYLKENPEVALDIENQIR 326          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_THISH (Protein recA OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=recA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVR 271
            P+KQAEFEI++GEG+S+LG ++D      IV + GAWYSY  +R+GQG+D A  +L+++P +  EIE+ +R
Sbjct:  254 PFKQAEFEILYGEGISRLGEVIDIGVQDGIVDKSGAWYSYNGERIGQGKDNARTFLKEHPEMAGEIERQIR 324          
BLAST of CF835635 vs. ExPASy Swiss-Prot
Match: RECA_SYNAS (Protein recA OS=Syntrophus aciditrophicus (strain SB) GN=recA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   59 PYKQAEFEIIFGEGVSKLGCMLDCAEMMDIVVRKGAWYSYGDQRLGQGRDKALQYLRDNPLLQEEIEKVVRS 274
            P+++ EF+I+FGEG+SK G +LD A    IV + GAWYSYG +R+GQGRD    +L+++P +   IE+ VRS
Sbjct:  256 PFRETEFDILFGEGISKAGDILDLAAESGIVEKSGAWYSYGGERIGQGRDNTRNFLKEHPDILVRIEEQVRS 327          
The following BLAST results are available for this feature:
BLAST of CF835635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA_RHIME2.368e-1553.52Protein recA OS=Rhizobium meliloti GN=recA PE=3 SV... [more]
RECA_EXISA2.368e-1546.48Protein recA OS=Exiguobacterium sp. (strain ATCC B... [more]
RECA_BIFLO2.368e-1544.44Protein recA OS=Bifidobacterium longum GN=recA PE=... [more]
RECA_BIFBR2.368e-1544.44Protein recA OS=Bifidobacterium breve GN=recA PE=3... [more]
RECA_AQUPY2.368e-1543.84Protein recA OS=Aquifex pyrophilus GN=recA PE=3 SV... [more]
RECA_AGRRK2.368e-1554.93Protein recA OS=Agrobacterium radiobacter (strain ... [more]
RECA_ROSCS3.093e-1547.22Protein recA OS=Roseiflexus castenholzii (strain D... [more]
RECA_CLOBB3.093e-1550.70Protein recA OS=Clostridium botulinum (strain Eklu... [more]
RECA_THISH4.039e-1549.30Protein recA OS=Thioalkalivibrio sp. (strain HL-Eb... [more]
RECA_SYNAS4.039e-1550.00Protein recA OS=Syntrophus aciditrophicus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835635 ID=CF835635; Name=CF835635; organism=Citrus sinensis; type=EST; length=677bp
CGGTGAGGATGTTGGGGTACGGGTTCGTGTCAGAGTGCAAAAGAGTAAGG
TATCAAGGCCATACAAACAAGCAGAGTTCGAAATCATATTTGGGGAGGGA
GTGAGTAAACTGGGATGCATGTTGGATTGTGCTGAAATGATGGATATCGT
GGTGAGGAAAGGAGCTTGGTATAGCTATGGAGACCAAAGATTGGGACAGG
GGAGAGATAAAGCATTGCAGTACTTGAGAGACAATCCTCTTCTTCAAGAG
GAAATAGAAAAGGTAGTTCGGTCTATGATGTCAGACGGAAGTGTACATCA
GGGCTCTTTTTTGAGGAATGTATCTCTGCCTAATCAAGAGGAAAATATTC
TTGAAGAGTTTTGAGTACAAACAAATTCACTATTAAGCTGTCATCAATAC
ACCACACAAGGCTCAAATGGAACTGGCAAAAACAATTGGGTGGATTTTTT
TCCTAGGCCCGTAAATTATGAATTAAGTGAAGTTAGATGCGATAATCGAA
CCATCCATCCATCCAGTTCTCCTGAGATCAAAACAACAGAAAATCTTTGC
ATCACGTTGACGGTGGTGTGAACTGAGCTGGGCAAGCATCTGTTGTATTT
TGGCGATGTAGATGAAAGTAGTATAGGGAATGACAGTGATATTTTGATAT
TTTTATAAAGTAAAGCAGGTTTTTACT
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