CF835646

Overview
NameCF835646
Unique NameCF835646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 62/192 (32.29%), Postives = 79/192 (41.15%), Query Frame = 3
Query:  225 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGKLAMFSMFGF 710
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ +LAM +M  F
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 62/192 (32.29%), Postives = 80/192 (41.67%), Query Frame = 3
Query:  225 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGKLAMFSMFGF 710
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ +LAM +M  F
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
BLAST of CF835646 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 79/243 (32.51%), Postives = 96/243 (39.51%), Query Frame = 3
Query:  141 TGSKSVSSGSPWYGPDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGKLAMFSMFGF 710
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ +LAM S FG+
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252          
The following BLAST results are available for this feature:
BLAST of CF835646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_SOLLC4.152e-1332.29Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL5.423e-1332.29Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB29_CHLRE1.208e-1232.51Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835646 ID=CF835646; Name=CF835646; organism=Citrus sinensis; type=EST; length=711bp
CTAGAGCTCACCCTTTAATACGATATTGTAAAATGGCAACCTCGACCATG
GCCCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGG
CAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCA
AGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTAC
TTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCC
TGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCT
TTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTG
GGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAA
GTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGG
GCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCT
GAGCTCAAGGTTAAGGAAATCAAGAATGGAAAGTTGGCTATGTTCTCCAT
GTTTGGTTTCT
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